1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtacttttattggctgctttacttgatttaagtcggtatctatattctcaacgtttcattttcttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCAC
species | Arabidopsis thaliana |
transcript | AT4G14710.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAACATTTGCACACTGATGAAGAGATCCGTTA-TGCGTTGCAGGAAGCG GTTACTTTGATGTTAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAEST: gi|86082287|gb|DR378046.1|DR378046
genomic: AGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGgtaagtactt ... ttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAA
EST: AGAACATTTGCACACTGATGAAGAGATCCGTTA-TGCGTTGCAGGAAGCG GTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAEST: gi|124885991|gb|EH964893.1|EH964893
genomic: AGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGgtaagtactt ... ttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAA
EST: AACATTTGCACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAAGCG GTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGEST: gi|86080820|gb|DR376577.1|DR376577
genomic: AACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGgtaagtactt ... ttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGG
EST: AGAACATTTGCACACTGATGAAGAGATCCGTTA-YGCGTTGCAGGAAGCG GTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAEST: gi|164191639|gb|ES133728.1|ES133728
genomic: AGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGgtaagtactt ... ttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAA
EST: TTGCAGGAAGCG GTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAEST: gi|125049106|gb|EL121375.1|EL121375
genomic: TTGCAGGAAGCGgtaagtactt ... ttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAA
EST: AGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCG GTTACTTTGATGTGAGGGATCGCAAT
genomic: AGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGgtaagtactt ... ttgggaaaagGTTACTTTGATGTGAGGGATCGCAAT
ttacttgatttaagtcggtatctatattctcaacgtttcattttcttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCAC
acttgat putative branch site (score: 5)
cgtttcattttctt putative PPT
tatctatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttttattggctgctttacttgatttaagtcggtatctatattctcaacgtttcattttcttgggaaaagGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA