Sequence
atgc intronic sequence ATGC exonic sequencegtgaaattcttgttccattgttttatcttctggaaaatgttttacgtgttgcttggttttcttgaagatatttagtgttgtttctattctctgaatgcagGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCCGGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G14330.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G14330.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G34970.1 (Glycine max), 3'ss of exon 4
gtgaa-attcttgttccattgttttatcttctggaaaat--gttttacgtgttgcttggttttcttgaagatatttagtgttgtttctattctctgaatgca-gGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCCGGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGG
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gtaaatattgtagtcttttaattgagtgaattgctagattcatattctctgttatttgaagtt-ttattgattgtgagtactttttctgctttccctttttaagGATTCCTTTGAAGATGATAAGTCAAAAATTCTAATGATACTATGTGCAAGTCCTGATCCTAAGGAGATACACAAGACAATCTCTACACTTGAATATGGGG
upper sequence: AT4G14330.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G32610.1 (Glycine max), 3'ss of exon 5
----gtgaaattcttgttccattgttttatcttctggaaa-atgttttacgtgttgcttggttttcttgaagatatttagtgttgtttctattctctgaatgcagGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCCGGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGG
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gtaaataatagtctt-tttagttgagtcaattgctgaattcatgttctatgttatttgaagttttatttgatgtgaatatttttttgtatattcccttttta-agGATTCATTTGAAGATGATAAGTCAAAAATTCTAATGATACTGTGTGCAAGTCCTGATCCTAAGGAGACACACAAGACAATCTCTACACTTGAATATGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125206004|gb|EL220958.1|EL220958EST: CTGACCATGCTTCTCCAG GACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGC
genomic: CTGACCATGCTTCTCCAGgtgaaattct ... ctgaatgcagGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttgcttggttttcttgaagatatttagtgttgtttctattctctgaatgcagGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCCGGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGG
ttgtttctattctct CT-rich tract
aagatattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaaattcttgttccattgttttatcttctggaaaatgttttacgtgttgcttggttttcttgaagatatttagtgttgtttctattctctgaatgcagGACTCTTTTGAAGATGACAAGTCAAAGATTCTAATGATCCTGTGTGCGAGCCCGGATCCAAAGGAAATGCACAAGACTCTCTGTACTCTAGAGTATGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA