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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacacgctaaatctctcttcttttgatgagttttttctcttggcatttgtgatttagtatcttttgtttttgtaacagCATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTGCCTGACGGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G13350.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423228|gb|EG465820.1|EG465820
EST:     CGAAATTTACCTCACAAGAAGTTACTGCTTTGAAAGAAGGTGGAAATCAG                         CATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTG
genomic: CGAAATTTACCTCACAAGAAGTTACTGCTTTGAAAGAAGGTGGAAATCAGgtaaacacgc ... tttgtaacagCATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTG
EST: gi|116423227|gb|EG465819.1|EG465819
EST:     CGAAATTTACCTCACAAGAAGTTACTGCTTTGAAAGAAGGTGGAAATCAG                         CATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTG
genomic: CGAAATTTACCTCACAAGAAGTTACTGCTTTGAAAGAAGGTGGAAATCAGgtaaacacgc ... tttgtaacagCATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgagttttttctcttggcatttgtgatttagtatcttttgtttttgtaacagCATGCTAAGGATATTTATTTTAAAGGATTGGATCAACAGCGGCAATCAGTGCCTGACGGAAG
 ttttgat  putative branch site (score: 4)
                                  tatcttttgttttt  putative PPT
                            atttagtatctttt  TA-rich tract