1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatctatggatgccacttttacttttccgaagacctgtaaaatgtttctatttaaccgtgattttcatgtatgcttcattcatttcagATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCCGATTAGTAAAAACCGGAGAAGAAGATTTTAACCTTTCAAAGAATAGCTA
species | Arabidopsis thaliana |
transcript | AT4G12110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTACAGATTCCAAAAGAAGCTTCTTGAGCAG ATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCCEST: gi|86040279|gb|DR336034.1|DR336034
genomic: GGTTACAGATTCCAAAAGAAGCTTCTTGAGCAGgtaaatctat ... ttcatttcagATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCC
EST: GGTTACAGATTCCAAAAGAAGCTTCTTGAGCAG ATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCCEST: gi|124926577|gb|EL004389.1|EL004389
genomic: GGTTACAGATTCCAAAAGAAGCTTCTTGAGCAGgtaaatctat ... ttcatttcagATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCC
EST: CTGACAAGGGTTACAGATTCCAAAAGAAGCTTCTTGAGCAG ATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCC
genomic: CTGACAAGGGTTACAGATTCCAAAAGAAGCTTCTTGAGCAGgtaaatctat ... ttcatttcagATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCC
cctgtaaaatgtttctatttaaccgtgattttcatgtatgcttcattcatttcagATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCCGATTAGTAAAAACCGGAGAAGAAGATTTTAACCTTTCAAAGAATAGCTA
atttaac putative branch site (score: 3)
cttcattc putative PPT
aaaatgtttctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatctatggatgccacttttacttttccgaagacctgtaaaatgtttctatttaaccgtgattttcatgtatgcttcattcatttcagATCAAGGAGTCGTCGAAGAAGAGCAACAAGCATAACGGAGGAATAAAATCCGATTAGTAAAAACCGGAGAAGAAGATTTTAACCTTTCAAAGAATAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA