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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcttctgtaaactttctttgtgaatatgttttatttgttcaccctttaaattttttcctattcctaccctgttatttgcagATTGCATGCAACGGATCATGTCCTGATTCAGCTGACGAAATTTCTCCTATATACTCGTTGTGGGCCACATTTATCGGTCTTTACATTGCCAATTATGTAG

Basic information

species Arabidopsis thaliana
transcript AT4G11800.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11800.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G018356_T01 (Zea mays), 3'ss of exon 3
gtatctcttctgtaaactttctttgtgaatatgt---tttatttgttcaccctt-taaattttttcctattcctaccctgttatttgcagATTGCATGCAACGGATCATGTCCTGATTCAGCTGACGAAATTTCTCCTATATACTCGTTGTGGGCCACATTTATCGGTCTTTACATTGCCAATTATGTAG------
||   | | ||| |   ||| |||||   ||  |   | | |||| |   |||| ||| ||| ||| ||    |  |  |||     ||| |  | |  || ||||||      | |||  |  | |||||||| ||  | ||||| |||||||| ||||| || |||||||||||||||||||||||        
gttagtatactgcaccttttgtttgtatttagatgattatctttgcttttccttgtaagtttattcttacatttgtctggtt-----cagTTGTCTTCAAATGGATCA------GGTTCCTCCAATGAAATTTCACCAGTCTACTCTTTGTGGGCTACATTCATGGGTCTTTACATTGCCAATTATGTCATAGAGC

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G36310.1 (Glycine max), 3'ss of exon 3
--------------------------gtatctcttctgtaaactttctttgtgaatatgttt-tatttgttcaccctttaaattttttcctattcctacc-ctgttatttgc-agATTGCATGCAACGGATCATGTCCTGATTCAGCTGACGAAATTTCTCCTATATACTCGTTGTGGGCCACATTTATCGGTCTTTACATTGCCAATTATGTAG
                            || | | | || | || || |  |  |||| | | |   | ||    ||||| ||  |||  |      |    | |||| |   |||| || ||||| ||||||||||||| |||| | || ||||||||||| || |||||  | ||||| |||||||| || ||||||||||| |||||||| |
gtacttaatataatgatataattatttgatttatgcagtcagctgtcgtaattcatatctatgtccattttggttctttacatggtttgatgccaaaattatttttatgtattagATAGCTTGCAATGGATCATGTCCTGGTTCATCAGATGAAATTTCTCCCATCTACTCACTTTGGGCTACATTTATTGGGCTTTACATTGCAAATTATGTGG

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G08860.1 (Glycine max), 3'ss of exon 3
---------------------gtatctcttctgtaaactttctttgtgaatatgttttatttgttcaccctttaaattttttcctattcctaccctg---ttatttgc-----agATTGCATGCAACGGATCATGTCCTGATTCAGCTGACGAAATTTCTCCTATATACTCGTTGTGGGCCACATTTATCGGTCTTTACATTGCCAATTATGTAG
                      ||| |  | | || | | |  |  || |  |  | ||| | |   |  | |   | ||||| |  |   |  |     ||||||       |||| || ||||| ||||||||||||| |||| | || ||||||||||| || |||||  | ||||| |||||||| || ||||||||||| |||||||| |
gtacttaatataatgatataattatttgatttatacagtctactgttgtaattcatatatctatgtccattctggttcttttcatggtttgatgccaaaattatttttgtattagATAGCTTGCAATGGATCATGTCCTGGTTCATCAGATGAAATTTCTCCCATTTACTCACTCTGGGCTACATTTATTGGGCTTTACATTGCAAATTATGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttatttgttcaccctttaaattttttcctattcctaccctgttatttgcagATTGCATGCAACGGATCATGTCCTGATTCAGCTGACGAAATTTCTCCTATATACTCGTTGTGGGCCACATTTATCGGTCTTTACATTGCCAATTATGTAG
                        ttttttcctattccta  CT-rich tract
                  tttaaattttttccta  TA-rich tract