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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtttctcttttgttacgtttaaggaatgtatctaaatatggattctcatttcttctcttgactttgtgattagTTGATAAGATGATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTG

Basic information

species Arabidopsis thaliana
transcript AT4G11720.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481172|gb|EG523764.1|EG523764
EST:     TTGTCCATGTGGACCGCAACGAAGAATGCCTTCTTCTTGTGGAGATATTT                         TTGATAAGATGATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTC
genomic: TTGTCCATGTGGACCGCAACGAAGAATGCCTTCTTCTTGTGGAGATATTTgtatgtgttt ... ttgtgattagTTGATAAGATGATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTC
EST: gi|116481171|gb|EG523763.1|EG523763
EST:     TTGTCCATGTGGACCGCAACGAAGAATGCCTTCTTCTTGTGGAGATATTT                         TTGATAAGATGATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTC
genomic: TTGTCCATGTGGACCGCAACGAAGAATGCCTTCTTCTTGTGGAGATATTTgtatgtgttt ... ttgtgattagTTGATAAGATGATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaggaatgtatctaaatatggattctcatttcttctcttgactttgtgattagTTGATAAGATGATTAAAGGGAAGGCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTG
                                     tcttgac  putative branch site (score: 3)
                        ttctcatttcttctct  CT-rich tract
      aatgtatctaaatat  TA-rich tract