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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAAC

Basic information

species Arabidopsis thaliana
transcript AT4G10610.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G10610.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 4
gtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAAC
      | |||       ||  |  |    ||    | |   |  ||     |||||| ||    ||    | ||     || || | |||||||| ||||||| |||||||| || ||  |||||||||  |||||||| | |||  |||| || || || || |||||||| |||||||||||
-----gtaagtggtcgagtgataattaagcatatacttagatcaatagtcaattggttaataaactgc---tctg----ctgcagAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAAC

upper sequence: AT4G10610.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G069102_T01 (Zea mays), 3'ss of exon 4
-----gtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttat-ggtttgtcattttgggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAAC
      ||||  || |  | | ||||  || ||||  |   |        |   |     |||||| || |    |   | |   |   || |||||||||  ||||||||||| |||| || ||  |||||||||  |||||||| |||||| ||||||| || || || |||||||| || |||  |||
gtaatatatccata-tcccaccatgtt-tcagtttgcttactctatgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagAGGGTGCAAGAGCTGCTCTGAATCTGTCAGGAACCGTGCTTGGATATTATCCTGTCAAGGTTCTGCCGTCAAAAACTGCCATTGCACCAGTCAACGAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046042|gb|DR341797.1|DR341797
EST:     TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAG                         TGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
genomic: TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattag ... ggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
EST: gi|116466690|gb|EG509282.1|EG509282
EST:     TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAG                         TGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
genomic: TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattag ... ggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
EST: gi|116466689|gb|EG509281.1|EG509281
EST:     TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAG                         TGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
genomic: TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattag ... ggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
EST: gi|116412046|gb|EG454638.1|EG454638
EST:     TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAG                         TGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC
genomic: TGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattag ... ggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtagTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAAC
                                     tcatttt  TA-rich tract