1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttctcttttgttcaaactttacggtttagctgtatagtgtggaaagatctctagctaatcataatacccttattttccttcttgggtcttgctactctagGCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG
species | Arabidopsis thaliana |
transcript | AT4G10030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGG GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAGEST: gi|86019779|gb|DR315525.1|DR315525
genomic: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGGgtcagtgttg ... gctactctagGCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG
EST: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGG GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAGEST: gi|86019777|gb|DR315523.1|DR315523
genomic: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGGgtcagtgttg ... gctactctagGCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG
EST: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGG GCAMTTTTGCTCGTAGATTGGCTCATGEST: gi|124719052|gb|EH810454.1|EH810454
genomic: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGGgtcagtgttg ... gctactctagGCACTTTTGCTCGTAGATTGGCTCATG
EST: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGG GCACTTTTGCTCGTAG
genomic: ACCTACTGCTGTTCTCCTACACGGAATTTTAGGGAGCGGGAAAAACTGGGgtcagtgttg ... gctactctagGCACTTTTGCTCGTAG
gatctctagctaatcataatacccttattttccttcttgggtcttgctactctagGCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG
agctaat putative branch site (score: 3)
tcttgct putative PPT
taatcataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcttttgttcaaactttacggtttagctgtatagtgtggaaagatctctagctaatcataatacccttattttccttcttgggtcttgctactctagGCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG
- - - - - -tcaaact
- - - - - - - - - - - ggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcata