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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttacttttagaagcttacaccaatattctataagtggaaacgtttacatcttttcatcttaaagccactcaaaacctacaatattgatttattataagctgtgagaatgctgagaactttacaaaccgttgtcttacccaattgcatctccttagcagtaagacttataccatcaattttgtgtctttttcagGGACGAGTTGAACCTAATGGTACAAGGGATAGTACATTGGAGATTCTTGTGGGAGACAATGGATGGGTTAATCACCGTGAAAATGGGATCTTGTACTCTT

Basic information

species Arabidopsis thaliana
transcript AT4G04670.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04670.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv10s0116g01770.t01 (Vitis vinifera), 3'ss of exon 4
gtatgttacttttagaagcttacaccaatattctataagtggaaacgtttacatcttttcatcttaaagccactcaaaacctacaatattgatttattataagctgtgagaatgctgagaactttacaaaccgttgtcttacccaattgcatctccttagca-gtaagacttataccatcaattttgtgtctttttcagGGACGAGTTGAACCTAATGGTACAAGGGATAGTACATTGGAGATTCTTGTGGGAGACAATGGATGGGTTAATCACCGTGAAAATGGGATCTTGTACTCTT
                                                                               || |  |  || | | || | ||| | |     ||||       |||  |       ||||    |||      ||  | | | || |     |||  ||    | |   | || |  |||| ||||||| |||   ||| |||||||| ||||| |||||||||||||||||||| ||||| |||||| ||||  |||||||||| ||  | || ||||
-------------------------------------------------------------------------------ccaatgaatttcactcatcacaagtttt-----tgct------cttatgat------tcttctgtaatgctggttctctggtatgttaacgagataaaattggctct---tattctctagGGCCGAGTTGCACCATCTGGGACAAGGGACAGTACTTTGGAGATTCTTGTGGGAGATAATGGTTGGGTTGATCATTGTGAAAATGGAATTCTCTATTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474296|gb|EG516888.1|EG516888
EST:     GCCTTGCACGCCAA                         GGACGAGTTGAACCTAATGGTACAAGGGATAGTACATTGGAGATTCTTGTG
genomic: GCCTTGCACGCCAAgtatgttact ... tctttttcagGGACGAGTTGAACCTAATGGTACAAGGGATAGTACATTGGAGATTCTTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattgcatctccttagcagtaagacttataccatcaattttgtgtctttttcagGGACGAGTTGAACCTAATGGTACAAGGGATAGTACATTGGAGATTCTTGTGGGAGACAATGGATGGGTTAATCACCGTGAAAATGGGATCTTGTACTCTT
                                      ttttgtgtctttttc  CT-rich tract
                                 atcaatttt  TA-rich tract