1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacaaaacatttcttttttctgaactatgcctttgtttttgtttttgtttttgcttagactcatctttctattgttctctttggtatcagGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTAATCAAAAGTCTGGTCCTTT
species | Arabidopsis thaliana |
transcript | AT4G02840.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGACACTCCAAGAATCAAACCCGAAAAGCCAACTGCAG GTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTEST: gi|164004850|gb|ES161662.1|ES161662
genomic: GAAGACACTCCAAGAATCAAACCCAAAAAGCCAACTGCAGgtaacaaaac ... ttggtatcagGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGT
EST: TCCAAGAATCAAACCCAAAAAGCCAACTGCAG GTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTGEST: gi|19798186|gb|AU229706.1|AU229706
genomic: TCCAAGAATCAAACCCAAAAAGCCAACTGCAGgtaacaaaac ... ttggtatcagGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTG
EST: TTGCTGGTTGAAGACACTCCAAGAATCAAACCCAAAAAAGCCAACTGCAG GTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTG
genomic: TTGCTGGTTGAAGACACTCCAAGAATCAAACCC-AAAAAGCCAACTGCAGgtaacaaaac ... ttggtatcagGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTG
tttttgtttttgtttttgcttagactcatctttctattgttctctttggtatcagGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTAATCAAAAGTCTGGTCCTTT
ctcatctttctattgt CT-rich tract
tttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaaacatttcttttttctgaactatgcctttgtttttgtttttgtttttgcttagactcatctttctattgttctctttggtatcagGTAAGATTCCAGCAGGTCGGGGACGTGGTCGTGGAAGAGGTCGTGGACGTGGCCGTGGTGGTCGTTAAGCATTTTGCAGTAATCAAAAGTCTGGTCCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG