Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG

Basic information

species Arabidopsis thaliana
transcript AT4G02620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os02g57854.1 (Oryza sativa), 3'ss of exon 4
---acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
   |       |||    || |||      || |  |  |  ||  || |    |   ||      |  ||   | |||  |  |    ||||||  |   || | || || |||||  ||||| |||||||||||||||||| ||| |||||||| || ||||||||||| |||||||| ||||| ||||| || || || |
gcaagccttcgtagttgtagtccttaggaaattttgtgcagcctaaaatggtcatccgttgtagacaaatcctgattgttttctgtt--tttcat-ttgacagGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACG

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: LOC_Os04g05080.1 (Oryza sativa), 3'ss of exon 4
acatgaaatagaat-gaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtca-aaaatgtaatgaga----aagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
  |  |  |  ||| |    | |  | | ||   |||| | ||    ||   |    ||| |||   ||| | ||  | |||       |  ||||||  | | || | || || |||||  | ||  | ||||||||||||||||  || |||||||| || |||||||| || || ||||| ||||| ||||| || || || |
-taatagctgaaatcgttaacaaattatgtgcagtctaaaatg----gttcttcgtgttcgacacaatcacacaacctgatggttttctatttttcat-ttggcagGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACG

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G158766_T02 (Zea mays), 3'ss of exon 4
acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttc-tttctacaatgtcaaaaatgtaa-tgagaaagtttcatgcttgt---agATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
    | |  |   ||      ||  | ||||| |     ||      || |       || |   | | |    | |   ||   | || |  ||| |||   |||| ||||| |||||  | ||  ||||||||||||||||||||||||| ||||| ||  |||||||||| |||||||||||||| |||||||| || || |
----ggagcattgtggaaatcatg-caatgtggtagtagctaggtgatcagagaaacgtccatcttataagctgtatccctgctgatgtctattgcgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 3
acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcat----gcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
     ||  |  |  ||   || | || |     |||      | |        |  |||   | ||   |    |  |||      || ||    | |   |||| ||||| |||||  ||||  |||||||||||||||||||||| || ||||| ||  |||||||||| |||||||||||||| |||||||| || || |
----aaatcatgaacagtagtaccactgtaccagctaggtaatagaagaaacgcccatcttataagttgtattcctgctgatgtctattaattgtgggtgacagATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCCGTCCCTGCTATTCTGGAGATCCCATCCAAGGACCATCCATATGATCCAGCGCACG

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G09570.1 (Glycine max), 3'ss of exon 4
---acatgaaatagaatgagg--cctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
      |||  | |  | | |  |||    |      |||       |      |||||   || | ||  ||||| || | ||       ||   ||  || || | || ||||||||  |||| ||||| |||||||| |||||||| |||||||||||  | || |||||||| || |||||||| |||||||| || ||||
tacttgtgatcttgggttaagaccctgctacccccaactcccggtatcccgacatgttt---tccataaattcaaagatcttatactttccttcgctg--tgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGCTATAACAAGCCTGTTCCTGCAATACTTGAAATCCCTTCTAAAGACCATCCTTATGATCCAGCACATG

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 4
-acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgt---ttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
 || ||  ||    |  |   |  | ||     |||    |  |    ||  |   |  |||| ||||  | ||| || | |  |     |||||    || || | || ||||||||  |||| ||||| ||||| || |||||||| |||||||||||  | || |||||||| || || ||||| |||||||| || ||||
gacttgtgatct--ttggttatgaccctgctacctcccacccccggtatccctacatgttttccacaaattgaaagatcttac-actttttttcac-tgtgcagGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAACAAGCCCGTTCCTGCAATACTTGAAATCCCTTCTAAAGATCATCCTTATGATCCGGCACATG

upper sequence: AT4G02620.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv05s0062g00210.t01 (Vitis vinifera), 3'ss of exon 4
-------acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
       |||  | | | |||||    |   |    |||  || |  |     || ||     |   |  ||||   ||   | |||     |  ||    ||  || | || || |||||  ||||| | || ||||||||||||||||| || || |||||  ||||||| || |||||||||||||| || |||||||||||||
catcttgacaaaataaaaaatgaaattt-catgagggtggcctttgatatttggtatgaagagtctaattatgt-gtaatcatcatg-----gcatctgaatttcagGTTGCGAACATGATAAGGTTCCTAGTAGATAGCTACAACAAGCCGGTACCAGCAATTCTGGAGATTCCATCCAAGGACCATCCTTACGATCCTGCTCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86018446|gb|DR314192.1|DR314192
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018455|gb|DR314201.1|DR314201
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018467|gb|DR314213.1|DR314213
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018442|gb|DR314188.1|DR314188
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGNTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018460|gb|DR314206.1|DR314206
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018443|gb|DR314189.1|DR314189
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018454|gb|DR314200.1|DR314200
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018463|gb|DR314209.1|DR314209
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018451|gb|DR314197.1|DR314197
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|125302674|gb|EL316759.1|EL316759
EST:     ATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: ATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018447|gb|DR314193.1|DR314193
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018456|gb|DR314202.1|DR314202
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018466|gb|DR314212.1|DR314212
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018458|gb|DR314204.1|DR314204
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018457|gb|DR314203.1|DR314203
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018461|gb|DR314207.1|DR314207
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|125076220|gb|EL139454.1|EL139454
EST:     CAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAG
genomic: CAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAG
EST: gi|125110907|gb|EL162638.1|EL162638
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGG
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGG
EST: gi|86018462|gb|DR314208.1|DR314208
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018450|gb|DR314196.1|DR314196
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|125243384|gb|EL257469.1|EL257469
EST:     CGCTATCATTCTTTTAAGCCAATAT                         ATTCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCC
genomic: CGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagA-TCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCC
EST: gi|86018444|gb|DR314190.1|DR314190
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|124751272|gb|EH841402.1|EH841402
EST:     TCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCTGTTCTTGGTGGATAGCTACAACAAGCCAGTT
genomic: TCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTT
EST: gi|125021840|gb|EL094109.1|EL094109
EST:     GATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAG
genomic: GATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAG
EST: gi|86018453|gb|DR314199.1|DR314199
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86075878|gb|DR371635.1|DR371635
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018449|gb|DR314195.1|DR314195
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|125131094|gb|EL173921.1|EL173921
EST:     CAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: CAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018464|gb|DR314210.1|DR314210
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018452|gb|DR314198.1|DR314198
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|125198361|gb|EL213315.1|EL213315
EST:     AATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTT
genomic: AATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTT
EST: gi|86018459|gb|DR314205.1|DR314205
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018448|gb|DR314194.1|DR314194
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|47828671|gb|CK118355.1|CK118355
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018445|gb|DR314191.1|DR314191
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|86018465|gb|DR314211.1|DR314211
EST:     AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: AGGAATTCTCAGCAAGGGATGATATCGCTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
EST: gi|124860660|gb|EH945097.1|EH945097
EST:     CTATCATTCTTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTC
genomic: CTATCATTCTTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTC
EST: gi|125278927|gb|EL293012.1|EL293012
EST:     TTTTAAGCCAATAT                         ATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT
genomic: TTTTAAGCCAATATgtaagtgtct ... atgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG
                       aaaaatgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatgaaatagaatgaggcctatctctatgtgctctatactgcaaagtctgtttctttctacaatgtcaaaaatgtaatgagaaagtttcatgcttgtagATCGCCAATATGATCCGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGCAATCTTGGAGATCCCTTCCAAGGACCATCCCTATGATCCTGCTCATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
-catgaaa
- - - - - - - - - - - -ctctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag