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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtttaaatcctcactgttatcgttattgtcacagaagaaacacttagacattaggatcaagtggaaattcattgagactgttaccattctgagttctggtctttccctgactgagtatagGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGATTTAGTCCTAAGTTACGGTGCCATGACACCTCTTCTGTCTCAATTCAATG

Basic information

species Arabidopsis thaliana
transcript AT4G02150.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02150.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 4
-----------------gtatatgtttaaatcctcactgttatcgttattgtcacagaagaaacacttagacattaggatcaagtgga--aattcattgagactgttaccattctgagttctggtctttccctgactgagtatagGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGATTTAGTCCTAAGTTACGGTGCCATGACACCTCTTCTGTCTCAATTCAATG
                   | | ||| |   || || |||| || ||  |||    | |      || || || | |  |||| | |   | | | |  |     | |  | | |||| | |    |||  |    |   | |||||||| |||||||| |||||||||||||| |||||||| ||||| || ||| | |||||  |  | || ||| |||  ||| |  || ||||||||||||
gtatatattaaaacagatgacaggttcatccccgca-tgttttc-ttgatgtgtttgcattgcagctcagtcagttg--tcaaatagttcattgcctataagtgatgaggaatttgagctttttagttttgccttttttctgtagGCTGTATGGGCATTAGGAAATGTTGCTGGTGACTCACCCAAATGTCGAGATCTTGTCCTTGGCCATGGGGCCTTGATGCCTTTGATGGCTCAATTCAATG

upper sequence: AT4G02150.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: PP1S63_171V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatatgtttaaatcctcactgttatcgttattgtc--acagaagaaacacttagacattaggatcaa-gtggaaattcattgagactgttaccattctgagttctggtctttccctgactgagtatagGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGATTTAGTCCTAAGTTACGGTGCCATGACACCTCTTCTGTCTCAATTCAATG
                          | | |  |||      || ||   |||    |  |   | || || | | || ||     ||  | |   ||| | ||||  |  | || || |   ||  ||||||||||||| ||||| || || ||||| ||||| || |||||||||||| | || ||  || | || ||  | |  ||| | ||  ||||  | |  |
--------------------------cataacggtccagtgtaacaattgcttgtttaaaaacgtgaacgtcgtactttatctgagcttctgca--tctaatttctaataatgccttgtccc-gtccagGCTGTTTGGGCTTTGGGCAACGTCGCTGGTGACTCTCCTAAATGCCGGGATCTTGTACTTGGTCATGGAGCTTTAATGCCTTTGCTCGCTCAGCTTACCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcattgagactgttaccattctgagttctggtctttccctgactgagtatagGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGATTTAGTCCTAAGTTACGGTGCCATGACACCTCTTCTGTCTCAATTCAATG
                                       ccctgac  putative branch site (score: 3)