1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttacattagaatcctaaaacgacatctattttgcgggtcgaatcatatggactaattttgtgagaaataatactaatgtgtacattatttttttgcagCTTTCAGTATTTTTGCTGATGAAACATACATTCGATGTGATTTACGGAACCGAAGAATATCCATTCTCTGTATTTACG
species | Arabidopsis thaliana |
transcript | AT4G02075.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
catatggactaattttgtgagaaataatactaatgtgtacattatttttttgcagCTTTCAGTATTTTTGCTGATGAAACATACATTCGATGTGATTTACGGAACCGAAGAATATCCATTCTCTGTATTTACG
tactaat putative branch site (score: 1)
ttattttttt putative PPT
aaataatactaatgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttacattagaatcctaaaacgacatctattttgcgggtcgaatcatatggactaattttgtgagaaataatactaatgtgtacattatttttttgcagCTTTCAGTATTTTTGCTGATGAAACATACATTCGATGTGATTTACGGAACCGAAGAATATCCATTCTCTGTATTTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - -ctaaaac
- - - - - - - - - - - - - - - - - - - - - aatcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa