Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttatcttatcgagctttatttagacaatacattcagtttctgattgtatatgttaggtatagaaaaacactctgatgtattgcaaacgagcaatctttccgtgtctttatgagtcatgacgaagattttggcagGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATCGAAGCAGTCAGTCAAAAGCGCTTTCGTGATTTGCTTTCAGACACTCCAGGGTTTTATG

Basic information

species Arabidopsis thaliana
transcript AT4G01660.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125081463|gb|EL142676.1|EL142676
EST:     ATTATACAAATCTAATTCCAAAGGGACTGTTTCTAGACAGAGCTATAAAG                         GTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATC
genomic: ATTATACAAATCTAATTCCAAAGGGACTGTTTCTAGACAGAGCTATAAAGgtattgttat ... attttggcagGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaaacgagcaatctttccgtgtctttatgagtcatgacgaagattttggcagGTTGCCAAAGAAGAGTTGGCGCAGGAGTGTGACTATGAAATCGAAGCAGTCAGTCAAAAGCGCTTTCGTGATTTGCTTTCAGACACTCCAGGGTTTTATG
                                          aagatttt  TA-rich tract