1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtgttacaaatcattgtcttcttctttagcataacagaaaacttgttcctgaactgttgataacaaatgatggtttctttgagtagGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAGTTCAGACACAAGAAATGG
species | Arabidopsis thaliana |
transcript | AT4G00755.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAG GAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGTEST: gi|164158933|gb|ES005802.1|ES005802
genomic: TATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGgtgtgttaca ... ctttgagtagGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGT
EST: AAAGCAACTATGTATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAG GAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCEST: gi|19875768|gb|AU236599.1|AU236599
genomic: AAAGCAACTATGTATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGgtgtgttaca ... ctttgagtagGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACC
EST: AAAGCAACTATGTATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAG GAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGT
genomic: AAAGCAACTATGTATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGgtgtgttaca ... ctttgagtagGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGT
taacagaaaacttgttcctgaactgttgataacaaatgatggtttctttgagtagGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAGTTCAGACACAAGAAATGG
tgataac putative branch site (score: 2)
tttcttt putative PPT
ataacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttacaaatcattgtcttcttctttagcataacagaaaacttgttcctgaactgttgataacaaatgatggtttctttgagtagGAAAATCGATTGCAGAGCTTTCAGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAGTTCAGACACAAGAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA