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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggattacaacatttgctcaatccactgaccagtttagtttagttccttacttgtctctgtttctttgtctttagGTACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATA

Basic information

species Arabidopsis thaliana
transcript AT3G61540.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61540.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv15s0046g02160.t01 (Vitis vinifera), 3'ss of exon 4
-----------------gtgagggattacaacatttgctcaatccact-gaccagtttagtttagttccttacttgtctctgtttct-ttgtctttagGTACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATA
                 ||   |  || |     ||  || ||   |   |    |  |   |||       ||      | ||||  ||||    |||| ||||| ||||| || |||||  | || || | |||||| ||   ||||||||||||| ||||||| || ||||| |||||||||||  |||| ||||
gtgagggaatttaggcggttctgattttcttttctttttctattttcccaattcataaaaaatagactaaccctcacaaatttttcccttgttacaagGTGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccactgaccagtttagtttagttccttacttgtctctgtttctttgtctttagGTACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATA
                        tccttac  putative branch site (score: 2)
                       ttccttacttgtctct  CT-rich tract
             tttagttta  TA-rich tract