Sequence
atgc intronic sequence ATGC exonic sequencegttcgttttgatactctttacattgtcttaacgagagcaataggcttctttcggtttcatgtgcttatacatggtttgattgaataaaccatattctcagttattggcctttttgcatgattaaagagtaagatcagcacaaaaagagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G61530.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G61530.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv15s0046g02170.t01 (Vitis vinifera), 3'ss of exon 3
gttcgttttgatactctttacattgtcttaacgagagcaataggcttctttcggtttcatgtgcttatacatggtttgattgaataaaccatattctcagttattggcctttttgcatgattaaagagtaagatcagcacaaaaagagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG
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---------------------------------------------------------------------------------------atctgaagatc--ttgtcagcttgctttcttgctcttcttggaaaagttgcac--------tctactgatcaattctttgacacaaaacttccctttcaatatactg---cagGTGCTAGTTTACCATGATCTGCTGGGAATGATGCAACACCCACATCATGCTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079956|gb|DR375713.1|DR375713EST: TTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAG GTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCT
genomic: TTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGgttcgttttg ... gtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagtgagttatctacatttctgatcaagtatgtcacatttttcttgtggattcagGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAG
ttctgat putative branch site (score: 3)
tttttcttgt putative PPT
atttttctt TA-rich tract