1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtataataaacttagcaatagagaggtgaaacggttttaatgtgattgagaagtgaagtgttaatttgtgagttttttctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAG
species | Arabidopsis thaliana |
transcript | AT3G61260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCACCTAGAGAAGAAGAAAGEST: gi|125216784|gb|EL230867.1|EL230867
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAG
EST: AGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGEST: gi|124926518|gb|EL004346.1|EL004346
genomic: AGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAG
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGAEST: gi|125300806|gb|EL314891.1|EL314891
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGA
EST: AAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGEST: gi|125158264|gb|EL186941.1|EL186941
genomic: AAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATG
EST: CGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAA-GCAGAGTATGCAGAGAGEST: gi|116446100|gb|EG488692.1|EG488692
genomic: CGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAG
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGEST: gi|125270235|gb|EL284320.1|EL284320
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAG
EST: GGAAAACAAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGAEST: gi|125023005|gb|EL095274.1|EL095274
genomic: GGAAAAC-AGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGA
EST: CTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCEST: gi|125091790|gb|EL149613.1|EL149613
genomic: CTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGC
EST: AAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGEST: gi|86080975|gb|DR376732.1|DR376732
genomic: AAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATG
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGEST: gi|116446101|gb|EG488693.1|EG488693
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAG
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGEST: gi|124849809|gb|EH934246.1|EH934246
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAG
EST: CTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAGGCAGAGTATGCEST: gi|116446103|gb|EG488695.1|EG488695
genomic: CTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGC
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGEST: gi|124924697|gb|EL002768.1|EL002768
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAG
EST: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGEST: gi|124795618|gb|EH885297.1|EH885297
genomic: GGGAAAACAGCAAGAAAGCAGCTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAG
EST: CTGTCGAAGCGCAACTCAAGAAAATCGAG GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGNGAGGATGAAGAATAAG
genomic: CTGTCGAAGCGCAACTCAAGAAAATCGAGgtataataaa ... ctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAG
gttttaatgtgattgagaagtgaagtgttaatttgtgagttttttctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAG
tgttaat putative branch site (score: 3)
ttttttctc putative PPT
tgttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataataaacttagcaatagagaggtgaaacggttttaatgtgattgagaagtgaagtgttaatttgtgagttttttctcaatgcagGAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG