1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccaaattcttatctatgttaacaatgcgtaagacatgcaaactcgacccttttagactgtattctcgttgaatctaattattaagtttgcttgttgcagCCGCTATGCTTCCTGCCTGGAATATCTTGCAAGTCTCAAATCGAATCTGCTGCTGGACATCCATCTTCATGATCACGTTGACACACTATATGATCAGATA
species | Arabidopsis thaliana |
transcript | AT3G61140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
gacccttttagactgtattctcgttgaatctaattattaagtttgcttgttgcagCCGCTATGCTTCCTGCCTGGAATATCTTGCAAGTCTCAAATCGAATCTGCTGCTGGACATCCATCTTCATGATCACGTTGACACACTATATGATCAGATA
atctaat putative branch site (score: 3)
tttgctt putative PPT
ttgaatctaattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaattcttatctatgttaacaatgcgtaagacatgcaaactcgacccttttagactgtattctcgttgaatctaattattaagtttgcttgttgcagCCGCTATGCTTCCTGCCTGGAATATCTTGCAAGTCTCAAATCGAATCTGCTGCTGGACATCCATCTTCATGATCACGTTGACACACTATATGATCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-ccaaatt
- - - - - - - - - - aacaatg
- - - - - - - - - - - - - - - aagacat
- - - - - - - - - - - - - - - - - - - caaactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatctaa