Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatgctcctctttttttctccgttatgatgtgactttagaagagggtactttgtgtgatctttagtcttgaatatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTCCTTGA

Basic information

species Arabidopsis thaliana
transcript AT3G60820.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60820.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaatgctcct--ctttttttctccgttatgatgtgact-ttagaagagggtactttgtgtgatctttagtcttgaatatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTCCTTGA
||||  || | |   ||| |  |  | | ||| |     || |  | |    | |  |  | |   ||||| | |   |||  | ||||||| || |||||||| || ||||| ||||| || || || ||||  ||||||||  |  | |||||||| ||||| |||||||||||||||||| | ||
gtaatgtgatacaaacttctgatgccagctataagccttctgtctgtattaagaaaataatat--cctttattttcatatac-ttcagGAAAGGGTTGTGTCTTCACATACGATGCTGTGGGATCCTATGAGAAGGTTGGATATAGCTCCCAAGGTTCAGGTTCAACACTCATCATGCCTTTCTTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86020231|gb|DR315977.1|DR315977
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATAC
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATAC
EST: gi|86020240|gb|DR315986.1|DR315986
EST:     TTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACTGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTT
genomic: TTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGAC-GAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTT
EST: gi|125073088|gb|EL137548.1|EL137548
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAA-GGGTGTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTG
EST: gi|125083058|gb|EL143757.1|EL143757
EST:     CTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: CTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020242|gb|DR315988.1|DR315988
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020253|gb|DR315999.1|DR315999
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020227|gb|DR315973.1|DR315973
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTG
EST: gi|86020238|gb|DR315984.1|DR315984
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGANNNN
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020249|gb|DR315995.1|DR315995
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAA-GGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAG
EST: gi|86020258|gb|DR316004.1|DR316004
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTT
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTT
EST: gi|86020267|gb|DR316013.1|DR316013
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTT
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagG-AAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTT
EST: gi|86020229|gb|DR315975.1|DR315975
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGG-TGTGTCTTT
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTT
EST: gi|86020239|gb|DR315985.1|DR315985
EST:     TTTTTCCCCTACTATGCSTTTAATGTTCTAGGAGGGCTTGACCGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGT
genomic: TTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGAC-GAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGT
EST: gi|86020234|gb|DR315980.1|DR315980
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020255|gb|DR316001.1|DR316001
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTT
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTT
EST: gi|86020245|gb|DR315991.1|DR315991
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020236|gb|DR315982.1|DR315982
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020244|gb|DR315990.1|DR315990
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACG
EST: gi|164212686|gb|ES035291.1|ES035291
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020264|gb|DR316010.1|DR316010
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTT
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTT
EST: gi|86020269|gb|DR316015.1|DR316015
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGGTGTCTTTAC
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTG-TGTCTTTAC
EST: gi|86020233|gb|DR315979.1|DR315979
EST:     GTTTTTCCCCTACTATGCCTTTWATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86078317|gb|DR374074.1|DR374074
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020232|gb|DR315978.1|DR315978
EST:     GTTTTTCCCCTACAATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTAC
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTAC
EST: gi|86020268|gb|DR316014.1|DR316014
EST:     GTTTTTCCCCTACTATGCCTTTA-TGTTCTAGGAGGGCTTGACGAGGA-G                         GTANAGGGTGTGTCTTTACTTACGA
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGA
EST: gi|86020228|gb|DR315974.1|DR315974
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
EST: gi|86020252|gb|DR315998.1|DR315998
EST:     GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAG                         GAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG
genomic: GTTTTTCCCCTACTATGCCTTTAATGTTCTAGGAGGGCTTGACGAGGAAGgtaaaatgct ... atatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgtgactttagaagagggtactttgtgtgatctttagtcttgaatatatccagGAAAAGGGTGTGTCTTTACTTACGACGCTGTTGGCTCATACGAGAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTCCTTGA
                                         ttgaatatat  TA-rich tract