1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagggtcatgttccttctcttgaacacattgtcaattgtcttctcgttgattcctattatagtctaaaatcaagttctacttgtctcgttaaccttccttggtttaatactgtctggatcttgacagGCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAG
species | Arabidopsis thaliana |
transcript | AT3G60180.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGATGGCTTCCCTCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTT GCTAGAATCGAGEST: gi|86076853|gb|DR372610.1|DR372610
genomic: TTGATGGCTTCCCTCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTTgtaagggtca ... atcttgacagGCTAGAATCGAG
EST: TTGATGGCTTCCCTCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTT GCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTGTCCAGAAGAAGAAEST: gi|86020352|gb|DR316098.1|DR316098
genomic: TTGATGGCTTCCCTCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTTgtaagggtca ... atcttgacagGCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTGTCCAGAAGAAGAA
EST: TTGATGGCTTCC-TCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTT GCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTG
genomic: TTGATGGCTTCCCTCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTTgtaagggtca ... atcttgacagGCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTG
agttctacttgtctcgttaaccttccttggtttaatactgtctggatcttgacagGCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAG
tttaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggtcatgttccttctcttgaacacattgtcaattgtcttctcgttgattcctattatagtctaaaatcaagttctacttgtctcgttaaccttccttggtttaatactgtctggatcttgacagGCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG