1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagagactagtttcaagattttcttttactccaactgcattgtcttaaatatcgaaatgttcacttctatctgctataaatctgaatatcatccattcttggctatgctatagttcaactgagtctcctttgtaatgtctgcaacagGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGCCAGCAG
species | Arabidopsis thaliana |
transcript | AT3G59870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAA GTACAAAACGTGATAGAAAAGCCTEST: gi|116389074|gb|EG431666.1|EG431666
genomic: CTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAAgtaagagact ... tctgcaacagGTACAAAACGTGATAGAAAAGCCT
EST: CTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAA GTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAEST: gi|86076243|gb|DR372000.1|DR372000
genomic: CTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAAgtaagagact ... tctgcaacagGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAA
EST: CTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAA GTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAA
genomic: CTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTACTGTCAAAAgtaagagact ... tctgcaacagGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAA
ccattcttggctatgctatagttcaactgagtctcctttgtaatgtctgcaacagGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGCCAGCAG
tttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagactagtttcaagattttcttttactccaactgcattgtcttaaatatcgaaatgttcacttctatctgctataaatctgaatatcatccattcttggctatgctatagttcaactgagtctcctttgtaatgtctgcaacagGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGCCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC