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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtttctctcctctcaactcttctctgagcttaaaaaccattccatttatcatttcgaatcttctttttgttggaccgcgcagCTTTTTCCAGATCTCAACAAGATAGTGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATCTCAACGGTAAAGTTG

Basic information

species Arabidopsis thaliana
transcript AT3G58790.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G58790.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G42280.2 (Glycine max), 3'ss of exon 4
------------gtaaagtttctctcctctcaactcttctctga------gcttaaaaaccattccat--ttatcatttcga-atcttctttttgttggaccgcg-cagCTTTTTCCAGATCTCAACAAGATAGTGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATCTCAACGGTAAAGTTG
             |   ||  | |||   |  | |  |  ||||      | ||||| |    |   |  | ||  ||||   ||||  ||||||| ||||| |  ||||| |||||||||||||| |||||||| || |||||||||||||||||||||||    ||  | || ||||| ||||||   ||||| || || |||||  
gtaattagttatttttggtagccctctgattgagtaataactgataacaagtttaaataatgcttggtgatgattgtttcatcatctgatttttgt-ggaccacaacagCTCTTTCCAGATCTCAAAAAGATAGTATTCTTGGATGATGATGTAGTAGTACAACATGACATATCTTCTTTGTGGGAACTAGATCTTAATGGCAAAGTCA

upper sequence: AT3G58790.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G45720.1 (Glycine max), 3'ss of exon 2
------------------gtaaagtttctctcctctcaactcttctctgagcttaaaaaccattccatttatcatttcg-aatcttctttttgttggaccgcgcagCTTTTTCCAGATCTCAACAAGATAGTGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATCTCAACGGTAAAGTTG
                  ||||  |||   |  |   ||| |   |    ||| |   |  ||||   | ||  ||||  |||||  ||||||| |  |  | ||||| ||||||||||| |||||| |||| ||| ||||||||||||| ||||||||    || || || ||||| ||||||   ||||| || || |||||  
cgcaatttaaaaccttgagtaagattttagtaataaaaacacgaat----gctcagtgatgattca--tgattgtttcataatctgatttttgtggaccatcacagCTCTTTCCAGATCTAAACAAGGTAGTATTGCTGGATGATGATGTGGTAGTACAACATGACCTATCTTCTTTGTGGGAACTAGATCTTAATGGCAAAGTCA

upper sequence: AT3G58790.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G03110.1 (Glycine max), 3'ss of exon 4
-----------------gtaaagtttctctcctctcaactcttctctgagcttaaaaaccattccatttatcatttcg-aatcttctttttgttggaccg-cgcagCTTTTTCCAGATCTCAACAAGATAGTGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATCTCAACGGTAAAGTTG
                 ||||  |||   |  |  |||  |   |    ||| |   |  |||    | ||  ||||  |||||  |||||  ||||||  | ||||| ||||||||||| |||||| |||| ||| ||||||||||||| ||||||||    ||  | || ||||||||||||  |||||| || || |||||  
gtaatttaaaacctcgagtaagattttagtaataacaagacgaat----gctaagtgatgatt--gatgattgtttcataatctgattttttgtggaccatcacagCTGTTTCCAGATCTAAACAAGGTAGTATTGCTGGATGATGATGTTGTAGTACAACATGACATATCTTCTTTATGGGAACTGGATCTTAATGGCAAAGTCA

upper sequence: AT3G58790.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv12s0142g00340.t01 (Vitis vinifera), 3'ss of exon 4
-------------------gtaaagtttctctcctctcaactc-ttctctgagcttaaaaaccattccatttatcatt--------tcga---atcttct--ttttgttggaccgcgcagCTTTTTCCAGATCTCAACAAGATAGTGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATCTCAACGGTAAAGTTG
                    |||    | ||||  ||  | |  ||   || ||  | |       | ||  ||| ||        | ||   ||  |||   |||  ||| |   |||||| |||||||||||  ||||||||||||| |||||||||||| | ||||||||    ||  | || ||| | ||||||   |||||||| || |||||||
gttaatacccctgactttcctaataaatttctcaactggattgattaattgggcggatattgttgcctatgcatctttagtgaagattgatttattatctgacttttgtgggctatgcagCTGTTTCCAGATCTTGACAAGATAGTGTTCTTGGATGATGATATTGTAGTACAACATGACTTATCATCTCTGTGGGAATTAGATCTCAATGGAAAAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttaaaaaccattccatttatcatttcgaatcttctttttgttggaccgcgcagCTTTTTCCAGATCTCAACAAGATAGTGTTGTTGGATGATGATGTAGTAGTACAGAGCGATCTTTCGTCTTTATGGGAAACGGATCTCAACGGTAAAGTTG
                atttatcattt  TA-rich tract