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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctgactagaaatactctctcagaaccctaagcctagcttcattatgtgttgcaaagtgtctttgacatgtttgtttttttggtgtgtctgtgtctgtgtctttgatatgttgaatcgaatccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTTGTTGGTTTATTTCTAGTCATATACTATCTTACTCGGTAAAATTGGCAAA

Basic information

species Arabidopsis thaliana
transcript AT3G58170.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125315737|gb|EL329822.1|EL329822
EST:     TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCA
genomic: TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCA
EST: gi|19877362|gb|AU238193.1|AU238193
EST:     TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
genomic: TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
EST: gi|124729328|gb|EH820730.1|EH820730
EST:     GGATTCATCAAGGGGAGTTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAG
genomic: GGATTCATCAAGGGGA-TTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAG
EST: gi|19797555|gb|AU229337.1|AU229337
EST:     TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
genomic: TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
EST: gi|164123589|gb|ES036222.1|ES036222
EST:     TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
genomic: TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
EST: gi|86060002|gb|DR355759.1|DR355759
EST:     TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
genomic: TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
EST: gi|86088029|gb|DR383788.1|DR383788
EST:     TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
genomic: TGGATTCATCAAGGGGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTT
EST: gi|164013883|gb|ES007281.1|ES007281
EST:     GGAACCATGGACCGCTTTAAAACG                         GTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCG
genomic: GGAACCATGGACCGCTTTAAAACGgtatatctga ... atccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttggtgtgtctgtgtctgtgtctttgatatgttgaatcgaatccttgcagGTGTTTGAGACAAAGTCAAGCCGAAGAATGCTGACGCTCGTGGCATCGTTTGTTGGTTTATTTCTAGTCATATACTATCTTACTCGGTAAAATTGGCAAA
                          ctttgat  putative branch site (score: 5)
                                              tccttgc  putative PPT
                           tttgatat  TA-rich tract