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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgatttttttcactcttcttctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcagACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G57410.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 2
gttttgatttttttcactcttcttctcccctttttatagactcttatcaagaatagataataagatattagcttacagaacaggacaacatgctttcttgtctgatcatatgtataaaatatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcagACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAG
                                                            | |  | |||  ||    || |  |||      ||||| |    || | ||  ||| | | | |||  ||| |||    | ||   | | |      | |    || | |||||||  | |     ||||| || |||||||| | |||||| || ||||||||||| ||||||||||| |||
----------------------------------------------------------ttttattttttattttttttaataaaaca------tttctgg---aataaaata-atagattct-tgcaacttaatttctctacatgctaagc-----catcacatatttctgcagACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482622|gb|EG525214.1|EG525214
EST:     AGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAG                         ACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACA-TTTTGGATT
genomic: AGTCTGAACATGGAAAGTTCTATATGGGAGATACCTACATTGTCTTGCAGgttttgattt ... atatgtgcagACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgctcctttattatctttcacatttatcatgattagctttcatatgtgcagACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAG
                                        ctttcat  CT-rich tract
          tttattatctttcaca  TA-rich tract