1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatactgcatctgttcttaaattatcctttctatttagtccattttgaagttactcaagatcttcatgctgtttgtattcagGTTTGATTATCGTGTAAACCCACAACGATCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCCGGATCTCAAAGATGGATCATTGGAACCGGGTTAT
species | Arabidopsis thaliana |
transcript | AT3G56840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGTAGAATGGATTGAATGCACAGATGATACATCAAGCTTCCTCAACAA GTTTGATTATCGTGTAAACCCACAACGATCAGAGAAEST: gi|86087057|gb|DR382816.1|DR382816
genomic: GATGTAGAATGGATTGAATGCACAGATGATACATCAAGCTTCCTCAACAAgtaaatactg ... ttgtattcagGTTTGATTATCGTGTAAACCCACAACGATCAGAGAA
EST: GATGTAGAATGGATTGAATGCACAGATGATACATCAAGCTTCCTCAACAA GTTTGATTATCGTGTAAACCCMCAACGATCAGAGAAATTCTACCCAGAGAT
genomic: GATGTAGAATGGATTGAATGCACAGATGATACATCAAGCTTCCTCAACAAgtaaatactg ... ttgtattcagGTTTGATTATCGTGTAAACCCACAACGATCAGAGAAATTCTACCCAGAGAT
tttctatttagtccattttgaagttactcaagatcttcatgctgtttgtattcagGTTTGATTATCGTGTAAACCCACAACGATCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCCGGATCTCAAAGATGGATCATTGGAACCGGGTTAT
attttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatactgcatctgttcttaaattatcctttctatttagtccattttgaagttactcaagatcttcatgctgtttgtattcagGTTTGATTATCGTGTAAACCCACAACGATCAGAGAAATTCTACCCAGAGATCAGAAAGTACTATCCGGATCTCAAAGATGGATCATTGGAACCGGGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA