Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttacatgctacgttttgttttgatggtgaatgtagcttctttaatgttatgttgcaagctttttttctgaattgtctcaaaaatgattaattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGTGGTGCTCCTGCTGCTCCTCGTGCCTGAAGACTTCAAGAAGCTGGCAATC

Basic information

species Arabidopsis thaliana
transcript AT3G56340.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164098182|gb|ES183736.1|ES183736
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCC
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCC
EST: gi|86017121|gb|DR312867.1|DR312867
EST:     CACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCTCNGACGCAAG                         GAGGGATACACCCCAAGCCT
genomic: CACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGC-CAGACGCAAGgtaacctctc ... taattctcagGAGG-ATACACCC-AAGCCT
EST: gi|86017108|gb|DR312854.1|DR312854
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCNGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017115|gb|DR312861.1|DR312861
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCACGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017144|gb|DR312890.1|DR312890
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017138|gb|DR312884.1|DR312884
EST:     CACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCTCNGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: CACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGC-CAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017097|gb|DR312843.1|DR312843
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017140|gb|DR312886.1|DR312886
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCCTGGTCAGGCTCCTCGCCCCTGCTG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACC-TGGTCAGGCTCCTCGCCC-TGCCG
EST: gi|86017117|gb|DR312863.1|DR312863
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCSNGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017142|gb|DR312888.1|DR312888
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG
EST: gi|86017123|gb|DR312869.1|DR312869
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCSGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017120|gb|DR312866.1|DR312866
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|116475477|gb|EG518069.1|EG518069
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCG
EST: gi|86017129|gb|DR312875.1|DR312875
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017139|gb|DR312885.1|DR312885
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017148|gb|DR312894.1|DR312894
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCSAGACGCAAG                         GAGGATACACCCN-GCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017096|gb|DR312842.1|DR312842
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|47831534|gb|CK121218.1|CK121218
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|164138198|gb|ES125409.1|ES125409
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTT-GCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTG
EST: gi|47829422|gb|CK119106.1|CK119106
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86076083|gb|DR371840.1|DR371840
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|125050957|gb|EL123226.1|EL123226
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCC
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCC
EST: gi|86017124|gb|DR312870.1|DR312870
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017130|gb|DR312876.1|DR312876
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017110|gb|DR312856.1|DR312856
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCWCAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86081497|gb|DR377254.1|DR377254
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|47830238|gb|CK119922.1|CK119922
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCTTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|47829771|gb|CK119455.1|CK119455
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017125|gb|DR312871.1|DR312871
EST:     GCACCAACCGTANAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGNTCCTCGCCCTGCC
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCC
EST: gi|116469688|gb|EG512280.1|EG512280
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017099|gb|DR312845.1|DR312845
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCMGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCG
EST: gi|124848585|gb|EH933022.1|EH933022
EST:     CCCACCACCNCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGACCGG
genomic: CCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG-CCGG
EST: gi|152038413|gb|AV822242.2|AV822242
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017128|gb|DR312874.1|DR312874
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCNCAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|116445932|gb|EG488524.1|EG488524
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGACTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017116|gb|DR312862.1|DR312862
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017137|gb|DR312883.1|DR312883
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017112|gb|DR312858.1|DR312858
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017114|gb|DR312860.1|DR312860
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017141|gb|DR312887.1|DR312887
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017111|gb|DR312857.1|DR312857
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCSAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017107|gb|DR312853.1|DR312853
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017131|gb|DR312877.1|DR312877
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCG
EST: gi|86017095|gb|DR312841.1|DR312841
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017146|gb|DR312892.1|DR312892
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017136|gb|DR312882.1|DR312882
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCG
EST: gi|86017102|gb|DR312848.1|DR312848
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCSAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86077122|gb|DR372879.1|DR372879
EST:     GCACCAACCATAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|116429180|gb|EG471772.1|EG471772
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017143|gb|DR312889.1|DR312889
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017098|gb|DR312844.1|DR312844
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCC-TGCCGG-
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017135|gb|DR312881.1|DR312881
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|116399767|gb|EG442359.1|EG442359
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017101|gb|DR312847.1|DR312847
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|116437428|gb|EG480020.1|EG480020
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTC
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTC
EST: gi|164061889|gb|ES051276.1|ES051276
EST:     GCACCAACCGTAGAGTT-GTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG
EST: gi|86017106|gb|DR312852.1|DR312852
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCSAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTG
EST: gi|86017119|gb|DR312865.1|DR312865
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCDGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCCTCCTCGCCCCTGCCG
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGC-TCCTCGCCC-TGCCG
EST: gi|86017149|gb|DR312895.1|DR312895
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017104|gb|DR312850.1|DR312850
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017134|gb|DR312880.1|DR312880
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGGCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017127|gb|DR312873.1|DR312873
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017147|gb|DR312893.1|DR312893
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCYDGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCSCTGCSGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017113|gb|DR312859.1|DR312859
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCCCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
EST: gi|86017133|gb|DR312879.1|DR312879
EST:     GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAG                         GAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT
genomic: GCACCAACCGTAGAGTTCGTACCCCACCACCTCGTTTTGCCAGACGCAAGgtaacctctc ... taattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttatgttgcaagctttttttctgaattgtctcaaaaatgattaattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGTGGTGCTCCTGCTGCTCCTCGTGCCTGAAGACTTCAAGAAGCTGGCAATC
                                          gattaat  putative branch site (score: 3)
                                                ttctc  CT-rich tract
                                  tcaaaaatgattaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actttacatgctacgttttgttttgatggtgaatgtagcttctttaatgttatgttgcaagctttttttctgaattgtctcaaaaatgattaattctcagGAGGATACACCCAAGCCTGCACAACCTGGTCAGGCTCCTCGCCCTGCCGGTGGTGCTCCTGCTGCTCCTCGTGCCTGAAGACTTCAAGAAGCTGGCAATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaat