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gtgatgcgatgctttttttttttggttgtgtcttgattattggcaagcatttcaaatattgatgtgttgcttttttcgtctttttgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGATAAGGATTTCAGGAAGCAACTTAGTGAAACTGTCAAAGCGATGCTGAGGA
species | Arabidopsis thaliana |
transcript | AT3G55610.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGGGCAGAGCAGACTCATGGCTTACTATGAGACTATGTTTGACCAG TTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGATEST: gi|164014849|gb|EL989974.1|EL989974
genomic: GTGTTGGGCAGAGCAGTCTCATGGCTTACTATGAGACTATGTTTGACCAGgtgatgcgat ... tgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGAT
EST: TGAGACTATGTTTGACCAG TTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGATEST: gi|164226064|gb|EL989750.1|EL989750
genomic: TGAGACTATGTTTGACCAGgtgatgcgat ... tgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGAT
EST: TGAGACTATGTTTGACCAG TTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTT-AGAGATEST: gi|152033743|gb|BP562130.3|BP562130
genomic: TGAGACTATGTTTGACCAGgtgatgcgat ... tgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGAT
EST: GTGTTGGGCAGAGCAGTCTCATGGCTTACTATGAGACTATGTTTGACCAG TTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGATEST: gi|124964110|gb|EL038400.1|EL038400
genomic: GTGTTGGGCAGAGCAGTCTCATGGCTTACTATGAGACTATGTTTGACCAGgtgatgcgat ... tgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGAT
EST: TGTTGGGCAGAGCAGTCTCATGGCTTACTATGAGACTATGTTTCGACCAG TTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAG
genomic: TGTTGGGCAGAGCAGTCTCATGGCTTACTATGAGACTATGTTT-GACCAGgtgatgcgat ... tgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAG
ttggcaagcatttcaaatattgatgtgttgcttttttcgtctttttgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGATAAGGATTTCAGGAAGCAACTTAGTGAAACTGTCAAAGCGATGCTGAGGA
tattgat putative branch site (score: 3)
tgttgcttttttcgtc CT-rich tract
atttcaaatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgcgatgctttttttttttggttgtgtcttgattattggcaagcatttcaaatattgatgtgttgcttttttcgtctttttgtgtggtagTTGGATGTGACGGTTGCTCAAATGCTTGTGACCGATAGCAGTTTTAGAGATAAGGATTTCAGGAAGCAACTTAGTGAAACTGTCAAAGCGATGCTGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG