1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtcacacccagggattatgtttccatcctcttgtagtaaaaccattataatttgtctgctgtattcacctcatatttagtgatcaacatttttcttcagAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTT
species | Arabidopsis thaliana |
transcript | AT3G55005.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTTGAAGGATTCTTGAAGTTCGAG AACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAGEST: gi|164135674|gb|ES207248.1|ES207248
genomic: ATGTTCTTGAAGGATTCTTGAAGTTCGAGgtatttcttc ... ttttcttcagAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAG
EST: CCGCTTCTTCTGGATGTTCTTGAAGGATTCTTGAAGTTCGAG AACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAG
genomic: CCGCTTCTTCTGGATGTTCTTGAAGGATTCTTGAAGTTCGAGgtatttcttc ... ttttcttcagAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAG
ttataatttgtctgctgtattcacctcatatttagtgatcaacatttttcttcagAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTT
catttttcttc CT-rich tract
tcatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcacacccagggattatgtttccatcctcttgtagtaaaaccattataatttgtctgctgtattcacctcatatttagtgatcaacatttttcttcagAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- -cacaccc
- - - - - - - - - - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaca