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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgtgtttcatcaacctttaagttcatctgacaatctttttgcagtgtcaaagaatcaaagaaggcaatgttttctaagatgttcttgaatctcttgcagCTGGTCTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTACCC

Basic information

species Arabidopsis thaliana
transcript AT3G54880.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125027644|gb|EL099913.1|EL099913
EST:     GAGATCAATCTCGACAAAGAAAAAACAACTGCAAAGGATCAGATTATAAG                         CTGGTCTACTACATA
genomic: GAGATCAATCTCGACAAAGAAAAAACA-CTGCAAAGGATCAGATTATAAGgtattatgtg ... tctcttgcagCTGGTCTACTACATA
EST: gi|124735020|gb|EH826422.1|EH826422
EST:     GGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAG                         CTGGTCTACTACATA
genomic: GGAGATCAATCTCGACAAAGAAAAAACACTGCAAAGGATCAGATTATAAGgtattatgtg ... tctcttgcagCTGGTCTACTACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcaaagaatcaaagaaggcaatgttttctaagatgttcttgaatctcttgcagCTGGTCTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTACCC
                                             tctcttgc  CT-rich tract
                     aatgtttt  TA-rich tract