1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttggaactcatattccctcttaagacatttcctctctacagttgttttcaaaattctttctgggaggttttagcttcttaaaagttgttgaataccgcatttcccattgatgtttaaagaaaaggaaaatactttggtatacggctttttgttgttgggtttattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGCTTCATAGGAGTGGAAGGCTAACGATTGAT
species | Arabidopsis thaliana |
transcript | AT3G54480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAG TGCCCTGGAACTGTTATCAACCTGCAAGCTTAGCGAATTTAACAGTAAAAGEST: gi|124816598|gb|EH901464.1|EH901464
genomic: GATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTT-GCGAATTTAACAGTAAAAG
EST: CTCGTGGTTCAGACAG TGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCEST: gi|124885720|gb|EH964622.1|EH964622
genomic: CTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
EST: CGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAG TGCCCTGGAACTGTTATCAACCTAAGCAAGCTTGCGAATTTAACAGTAAAAEST: gi|86084807|gb|DR380566.1|DR380566
genomic: CGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCT--GCAAGCTTGCGAATTTAACAGTAAAA
EST: TCGTCTGTGCTCGTGGTTCAGACAG TGCCCTGGAACTGTTATCGACCTGCAAGCTTGCGAATTTAACAGTAAAAGCEST: gi|19874582|gb|AU235413.1|AU235413
genomic: TCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
EST: GGCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAG TGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
genomic: GGCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGgtttggaact ... tattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGC
aagaaaaggaaaatactttggtatacggctttttgttgttgggtttattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGCTTCATAGGAGTGGAAGGCTAACGATTGAT
aaaatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggaactcatattccctcttaagacatttcctctctacagttgttttcaaaattctttctgggaggttttagcttcttaaaagttgttgaataccgcatttcccattgatgtttaaagaaaaggaaaatactttggtatacggctttttgttgttgggtttattgtgcagTGCCCTGGAACTGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGCTTCATAGGAGTGGAAGGCTAACGATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG