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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaattaccttgtatttgtaacgtcattctttatttttccttagtgttttaggctttgatcaattttatatcatgcttttgtagTTGACAACTGCTGGCATCAAGTTTGGTAAAATGTACAGTCCAATGCAGTCGTATAATAAG

Basic information

species Arabidopsis thaliana
transcript AT3G54460.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406001|gb|EG448593.1|EG448593
EST:     TATTGATTTTCTCTCAATTTCTGGAGCATATTCACGTGATTGAACAACAG                         TTGACAACTGCTGGCATCAAGTTTGGTAAAATGTACAGTCCAATGCAGTCG
genomic: TATTGATTTTCTCTCAATTTCTGGAGCATATTCACGTGATTGAACAACAGgtatgaatta ... gcttttgtagTTGACAACTGCTGGCATCAAGTTTGGTAAAATGTACAGTCCAATGCAGTCG
EST: gi|116471154|gb|EG513746.1|EG513746
EST:     TATTGATTTTCTCTCAATTTCTGGAGCATATTCACGTGATTGAACAACAG                         TTGACAACTGCTGGCATCAAGTTTGGTAAAATGTACAGTCCAATGCAGTCG
genomic: TATTGATTTTCTCTCAATTTCTGGAGCATATTCACGTGATTGAACAACAGgtatgaatta ... gcttttgtagTTGACAACTGCTGGCATCAAGTTTGGTAAAATGTACAGTCCAATGCAGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttttccttagtgttttaggctttgatcaattttatatcatgcttttgtagTTGACAACTGCTGGCATCAAGTTTGGTAAAATGTACAGTCCAATGCAGTCGTATAATAAG
                        ctttgat  putative branch site (score: 5)
                                            tgctttt  putative PPT
                         tttgatcaattttata  TA-rich tract