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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgaacaatcgaacaagcttattgttggctttgtttttctcaattcaaaaaccaattcttttatagtaattactgatttttgggactttgtttacttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTTTGTGAATCGCTCGTAAAGAGTTATGGTTTCTTGTTGCAAAATCGTTAT

Basic information

species Arabidopsis thaliana
transcript AT3G53740.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164090029|gb|ES059535.1|ES059535
EST:     GTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164026355|gb|ES073498.1|ES073498
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGA
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGA
EST: gi|125326573|gb|EL340653.1|EL340653
EST:     CAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: CAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|125152828|gb|EL184274.1|EL184274
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCAT
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCAT
EST: gi|164149954|gb|ES051516.1|ES051516
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGAAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAAC
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAAC
EST: gi|164046415|gb|ES182121.1|ES182121
EST:     AGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: AGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164172984|gb|ES145411.1|ES145411
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTG
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTG
EST: gi|164196726|gb|ES038504.1|ES038504
EST:     GTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164052800|gb|EL981951.1|EL981951
EST:     AGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGTGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: AGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164121556|gb|ES114762.1|ES114762
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACT
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: gi|124804617|gb|EH892314.1|EH892314
EST:     GGAGATGTCCAGTGTTCTCCGCAAGATTGAG                         GTCTGGCGGTGGTGGTGCAGCTGAGAAGAAGAAGTGAACGTCATCTTAAG
genomic: GGAGATGTCCAGTGTTCTCCGCAAGA-TGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAG
EST: gi|164035054|gb|ES150050.1|ES150050
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAAC
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAAC
EST: gi|124819319|gb|EH904185.1|EH904185
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGACGGTGGTGG
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGG-CGGTGGTGG
EST: gi|124982709|gb|EL055495.1|EL055495
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAG
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAG
EST: gi|125239550|gb|EL253635.1|EL253635
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAG
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAG
EST: gi|164039007|gb|ES135682.1|ES135682
EST:     CGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: CGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|124935464|gb|EL012447.1|EL012447
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGA
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGA
EST: gi|164213397|gb|ES018708.1|ES018708
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAA
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAA
EST: gi|124887884|gb|EH966786.1|EH966786
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGA
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGA
EST: gi|86053782|gb|DR349539.1|DR349539
EST:     GAGCCAAGCGAAAGAGAGGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GAGCCAAGCGAAAGAGAG-AGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|163996654|gb|ES055982.1|ES055982
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACT
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: gi|86086302|gb|DR382061.1|DR382061
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|163979723|gb|ES038776.1|ES038776
EST:     GAGCCAAGCGAAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGT
genomic: GAGCCAAGCG-AAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGT
EST: gi|164069900|gb|ES134388.1|ES134388
EST:     TCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: TCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|124721863|gb|EH813265.1|EH813265
EST:     AGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: AGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|124986208|gb|EL058744.1|EL058744
EST:     GAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTACTCCGCAAGATGAG                         GTCTGGCGGTGGT
genomic: GAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTT-CTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGT
EST: gi|125176919|gb|EL196220.1|EL196220
EST:     GAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164155529|gb|ES142993.1|ES142993
EST:     CCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: CCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164106639|gb|EL968184.1|EL968184
EST:     GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCAT
genomic: GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCAT
EST: gi|125011372|gb|EL083641.1|EL083641
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACT
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: gi|124890009|gb|EH968911.1|EH968911
EST:     AGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAA
genomic: AGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAA
EST: gi|124735410|gb|EH826812.1|EH826812
EST:     AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACT
genomic: AGAGCCAAGCGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACT
EST: gi|164216074|gb|ES047637.1|ES047637
EST:     GTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
EST: gi|164058093|gb|ES100412.1|ES100412
EST:     AGCGAAAGAGAGAGGAGATGTCCAGTTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGA
genomic: AGCGAAAGAGAGAGGAGATGTCCAG-TGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGA
EST: gi|125091638|gb|EL149461.1|EL149461
EST:     GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAG                         GTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT
genomic: GAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGgtaaactgaa ... ttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaattcttttatagtaattactgatttttgggactttgtttacttacacgcagGTCTGGCGGTGGTGGTGCAACTGAGAAGAAGAAGTGAACGTCATCTTAAGTTTGTGAATCGCTCGTAAAGAGTTATGGTTTCTTGTTGCAAAATCGTTAT
                                          tacttac  putative branch site (score: 1)
                                        tttactt  CT-rich tract
        ttttatagtaattact  TA-rich tract