1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgtggttctcctctttcatttatctttctgatagtcgaattttgtacgtggatccttttatggggtatatggtgtatgattgtatctaattaggattgtctgctaccctttgctattgttatctgtctgatagGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCGAGTGCAAAGAGAGATGGTCAACCAAGCCAAGTGTCTCAG
species | Arabidopsis thaliana |
transcript | AT3G53340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGCGATATAGAGAGATGGAGEST: gi|164024687|gb|ES169008.1|ES169008
genomic: ATGCGATATAGAGAGATGGAG
EST: ATGCGATATAGAGAGATGGAG
genomic: ATGCGATATAGAGAGATGGAG
attgtatctaattaggattgtctgctaccctttgctattgttatctgtctgatagGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCGAGTGCAAAGAGAGATGGTCAACCAAGCCAAGTGTCTCAG
atctaat putative branch site (score: 3)
tctgtct putative PPT
atctaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtggttctcctctttcatttatctttctgatagtcgaattttgtacgtggatccttttatggggtatatggtgtatgattgtatctaattaggattgtctgctaccctttgctattgttatctgtctgatagGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCGAGTGCAAAGAGAGATGGTCAACCAAGCCAAGTGTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG