Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaactgtctgcaacatcaccaatatcaatgccctgctcatctgtgtagtcccactgatctattataacattacattactctctatacaagcttaattacttatgttattggaactaaatcgtgctatgatttttttgttatccattgtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAAGAGTCTTGTCAGTGCAACTGGGGATGTCTTCAAGTATCAGACGCTCAT

Basic information

species Arabidopsis thaliana
transcript AT3G52880.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038366|gb|DR334121.1|DR334121
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038353|gb|DR334108.1|DR334108
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038384|gb|DR334139.1|DR334139
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038379|gb|DR334134.1|DR334134
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038373|gb|DR334128.1|DR334128
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038364|gb|DR334119.1|DR334119
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038359|gb|DR334114.1|DR334114
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTANNNGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038370|gb|DR334125.1|DR334125
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|125243834|gb|EL257919.1|EL257919
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGC
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGC
EST: gi|86038368|gb|DR334123.1|DR334123
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038365|gb|DR334120.1|DR334120
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|124712921|gb|EH804323.1|EH804323
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCA
EST: gi|86038377|gb|DR334132.1|DR334132
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|152033821|gb|BP816817.2|BP816817
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038378|gb|DR334133.1|DR334133
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038374|gb|DR334129.1|DR334129
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038367|gb|DR334122.1|DR334122
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGGGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038380|gb|DR334135.1|DR334135
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038376|gb|DR334131.1|DR334131
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGGAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038356|gb|DR334111.1|DR334111
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038354|gb|DR334109.1|DR334109
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038381|gb|DR334136.1|DR334136
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038383|gb|DR334138.1|DR334138
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038357|gb|DR334112.1|DR334112
EST:     TGTTGGCAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGAGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038369|gb|DR334124.1|DR334124
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038361|gb|DR334116.1|DR334116
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTKGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038362|gb|DR334117.1|DR334117
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038382|gb|DR334137.1|DR334137
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|301501396|gb|HO206936.1|HO206936
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA
EST: gi|86038375|gb|DR334130.1|DR334130
EST:     TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAG                         GAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTSTGCCA
genomic: TGTTGGTAGTGGTGGAGAAAAACTGCTTCCTGAATCCTACAAGCAGAAAGgtaatgaact ... gtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttattggaactaaatcgtgctatgatttttttgttatccattgtgtttgtagGAATTGAGTTGATACTAAGCACAGAAATAGTGAAAGCTGATCTCTCTGCCAAGAGTCTTGTCAGTGCAACTGGGGATGTCTTCAAGTATCAGACGCTCAT
          aactaaa  putative branch site (score: 2)
                       tatgatttttttgtta  TA-rich tract