1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtagccagaaaaaacaaatcctcttctatgaagtttgtgtgtattttttttcaactcaagattctgataaaatgatcatggttgtttctatgtgttggtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAATGACAACTGGGGATACT
species | Arabidopsis thaliana |
transcript | AT3G52300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGEST: gi|86024111|gb|DR319864.1|DR319864
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAG
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGTAEST: gi|125055367|gb|EL125624.1|EL125624
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024104|gb|DR319857.1|DR319857
genomic: AGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024106|gb|DR319859.1|DR319859
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024119|gb|DR319872.1|DR319872
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCEST: gi|86024133|gb|DR319886.1|DR319886
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGC
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAA-GCTCAGCACCATGACTGCAGAEST: gi|86024097|gb|DR319850.1|DR319850
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAA-GCTCAGCACCATGACTGCAGATGAGTACTTTGAGEST: gi|86078506|gb|DR374263.1|DR374263
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAG
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|164062067|gb|ES154494.1|ES154494
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: GTCCAAGAGATCAGC AAAAAGCTCAGTCTACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGEST: gi|86024114|gb|DR319867.1|DR319867
genomic: GTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAG-C-ACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGG
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024123|gb|DR319876.1|DR319876
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGEST: gi|86024118|gb|DR319871.1|DR319871
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAG
EST: AGGAGTCTGAACGGTTGGAGAA-GAAATTGCTGATGTCCAAGAGATCAGC AAAA-GCCTCAGCAEST: gi|86081814|gb|DR377573.1|DR377573
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGC-TCAGCA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024144|gb|DR319897.1|DR319897
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAWATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGEST: gi|164059695|gb|ES149220.1|ES149220
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAG
EST: AGAAATTGCTGATGTCCAAGAGATCAGC -AAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024150|gb|DR319903.1|DR319903
genomic: AGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|164123922|gb|EL978423.1|EL978423
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: GTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGEST: gi|86024105|gb|DR319858.1|DR319858
genomic: GTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAG
EST: AGGAGTCTGAACGGTTGGAGAAANNAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGA-EST: gi|86024101|gb|DR319854.1|DR319854
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAEST: gi|86024099|gb|DR319852.1|DR319852
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|164014610|gb|EL974343.1|EL974343
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: GTTGGAG-AAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGEST: gi|125249293|gb|EL263378.1|EL263378
genomic: GTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAG
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAEST: gi|164207221|gb|ES171506.1|ES171506
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGA
EST: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCEST: gi|124795002|gb|EH884681.1|EH884681
genomic: AACGGTTGGAGAAAGAAATTGCTGATGTCC-AAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGC
EST: TGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|164029721|gb|ES083291.1|ES083291
genomic: TGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: GAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCEST: gi|164051672|gb|EL990684.1|EL990684
genomic: GAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGC
EST: GGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGEST: gi|125084863|gb|EL144922.1|EL144922
genomic: GGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAG
EST: AGAAAGAAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|125314476|gb|EL328561.1|EL328561
genomic: AGAAAG-AAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGAEST: gi|163986284|gb|ES084708.1|ES084708
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGA
EST: TGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|125283053|gb|EL297138.1|EL297138
genomic: TGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGAEST: gi|86024136|gb|DR319889.1|DR319889
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AARAAGCTCAGCACCATGACTGCAGAEST: gi|164214992|gb|ES049987.1|ES049987
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGA
EST: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACEST: gi|164067132|gb|ES148877.1|ES148877
genomic: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGAC
EST: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAA-GCTCAGCACCATGACEST: gi|86024129|gb|DR319882.1|DR319882
genomic: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGAC
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTEST: gi|164076699|gb|ES165396.1|ES165396
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACT
EST: TGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|125276627|gb|EL290712.1|EL290712
genomic: TGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|301502222|gb|HO207762.1|HO207762
genomic: AACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024110|gb|DR319863.1|DR319863
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAA-GCTCAGCACCATGACTGCAGAEST: gi|86024135|gb|DR319888.1|DR319888
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGA
EST: AGGAATCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAA-GCTCAGCACCATGACTGCAGATGAGTEST: gi|86082095|gb|DR377854.1|DR377854
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGT
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAAEST: gi|86024130|gb|DR319883.1|DR319883
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAA
EST: GGAGTCTRAACGGTTGGAGAAAGAAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCEST: gi|86024141|gb|DR319894.1|DR319894
genomic: GGAGTCTGAACGGTTGGAGAAAGAAA-TTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAG-CACCATGACTGCAGATGAGTACTTTGAGAAGCACC
EST: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGC AAAAAGCTCAGCACC
genomic: AGGAGTCTGAACGGTTGGAGAAAGAAATTGCTGATGTCCAAGAGATCAGCgtaagtagcc ... gtgtaatcagAAAAAGCTCAGCACC
aactcaagattctgataaaatgatcatggttgtttctatgtgttggtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAATGACAACTGGGGATACT
ttctgat putative branch site (score: 3)
ataaaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagccagaaaaaacaaatcctcttctatgaagtttgtgtgtattttttttcaactcaagattctgataaaatgatcatggttgtttctatgtgttggtgtaatcagAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTGAGAAGCACCCGGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAATGACAACTGGGGATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT