1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtttatctgataaactctcattcttaattacttgcatgagtcacttcttaaacggaagatatctttactaatcttattcaaaccagGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATGTTCAACAAGATGGATACTGATAATGATGGTATAGTTTCCATTGAGGAGT
species | Arabidopsis thaliana |
transcript | AT3G51850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTGAAGCAATTTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGG GTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATGEST: gi|116407590|gb|EG450182.1|EG450182
genomic: GGTTGAAGCAATTTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGGgtttgtttat ... ttcaaaccagGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATG
EST: GGTTGAAGCAATTTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGG GTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATGEST: gi|125064600|gb|EL132167.1|EL132167
genomic: GGTTGAAGCAATTTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGGgtttgtttat ... ttcaaaccagGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATG
EST: TTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGG GTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATG
genomic: TTTCAGTGATGAACCGATTCAAGAGAAAAGCTTTAAGGgtttgtttat ... ttcaaaccagGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATG
ttgcatgagtcacttcttaaacggaagatatctttactaatcttattcaaaccagGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATGTTCAACAAGATGGATACTGATAATGATGGTATAGTTTCCATTGAGGAGT
tactaat putative branch site (score: 1)
tcttattc CT-rich tract
tttactaatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttatctgataaactctcattcttaattacttgcatgagtcacttcttaaacggaagatatctttactaatcttattcaaaccagGTTATTGCCGAATTTTTATCTACGGAAGAAGTAGAAGACATCAAAGTAATGTTCAACAAGATGGATACTGATAATGATGGTATAGTTTCCATTGAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG