Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctccctaataaaccttaagttttgatttgctatagactcgatcagttgcactgactatcgcaataacattgcagACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGG

Basic information

species Arabidopsis thaliana
transcript AT3G51090.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51090.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G116427_T01 (Zea mays), 3'ss of exon 4
gtcagctcc---ctaataaacc--ttaagttttgatttgctatagactcgatcagttgcactgactatcgcaataacattgcagACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGG
|||||        | |  | |   ||| ||   || |    ||  ||    |||||   | ||   || |    ||     |||  | |||||||| || ||||| |||||||| || ||||| ||||||||||||| |||
gtcagtgttaagttcaagagctggttatgtcaggaatctgaatgaacatactcagtctaattgttcattgtgtgaa----acagGTATGAGATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476183|gb|EG518775.1|EG518775
EST:     GAGAATGAGAAACTCCGCAATGACATAGAGCGAATCCGCTCTGATATAAG                         ACACGAGATCGA
genomic: GAGAATGAGAAACTCCGCAATGACATAGAGCGAATCCGCTCTGATATAAGgtcagctccc ... aacattgcagACACGAGATCGA
EST: gi|116476184|gb|EG518776.1|EG518776
EST:     GAGAATGAGAAACTCCGCAATGACATAGAGCGAATCCGCTCTGATATAAG                         ACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGA
genomic: GAGAATGAGAAACTCCGCAATGACATAGAGCGAATCCGCTCTGATATAAGgtcagctccc ... aacattgcagACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgatttgctatagactcgatcagttgcactgactatcgcaataacattgcagACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGG
                                         caataac  putative branch site (score: 2)
                                          aataacatt  TA-rich tract