Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcaacgatcttgactatgtttgaaatattttgcttatttgcagtgactcgtttcctcatatttttgttcattttgggatcgaaagGTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCTGTCCTTCGTTTCGCTTTCATTGAATTTACCAATGAAG

Basic information

species Arabidopsis thaliana
transcript AT3G49390.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077541|gb|DR373298.1|DR373298
EST:     GTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAG                         GTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCTGTCCTTCGTTTCGCT
genomic: GTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAGgtacttcaac ... ggatcgaaagGTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCTGTCCTTCGTTTCGCT
EST: gi|125257895|gb|EL271980.1|EL271980
EST:     GTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAG                         GTCGTTGATTGTCGTGTATGCGG
genomic: GTTACAGAGGAGAACCTCGCAGGTGTCTTTATTAACTGTGGACAGgtacttcaac ... ggatcgaaagGTTGTTGATTGTCGTGTATGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttatttgcagtgactcgtttcctcatatttttgttcattttgggatcgaaagGTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCTGTCCTTCGTTTCGCTTTCATTGAATTTACCAATGAAG
                           atatttttgttcattt  TA-rich tract