1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagatagactgattgaattactatattgggggatagttttttttactttatagctcttttttcgattctttagctcatcggttttgttacaaatgcagAAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAACGGCAGTGAAACTATCCAAGATGAG
species | Arabidopsis thaliana |
transcript | AT3G49350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTTTAATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGGG AAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAAEST: gi|116424888|gb|EG467480.1|EG467480
genomic: GGTTTTAATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGAGgtgagataga ... acaaatgcagAAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAA
EST: GGTTTTAATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGGG AAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAA
genomic: GGTTTTAATAGTTCTAAAGAAGAGAGAGTTACTATAAGAAACCGGAGGAGgtgagataga ... acaaatgcagAAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAA
tactttatagctcttttttcgattctttagctcatcggttttgttacaaatgcagAAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAACGGCAGTGAAACTATCCAAGATGAG
tctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatagactgattgaattactatattgggggatagttttttttactttatagctcttttttcgattctttagctcatcggttttgttacaaatgcagAAAGGAGTATGAGAGACTACGTAGGCAGTGCAAACGGCTTCAAAAACACAATAACGGGACTCGTAAGTTATACAACGGCAGTGAAACTATCCAAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG