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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttatgtctctttactttgtaaagatagacttaccgtggttcttgtatttagggtatataacgtaatataatgttgtctcttgtttcatatgctttttttgaaagatgtaagtttatgtgtctattggtttgcagATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAAGGCACATA

Basic information

species Arabidopsis thaliana
transcript AT3G48500.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48500.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtttatgtctctttactttgtaaagatagacttaccgtggttcttgtatttagggtatataacgtaatataatgttgtctcttgtttcatatgctttttttgaaagatgtaagtttatgtgtct-attggtttgcagATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAAGGCACATA
                                |    || |    |     || ||     | ||||   | || |       || | ||||| ||  ||  |          |   || |||| |||  ||   || ||| ||||| ||||||||||| ||||| |||| |||||| || ||   |||||||||||| |||||||| || |||||||||  |                  
--------------------------------gtacaacagctaattcaacatctatcaagt-taacaacacattaatagaaatcatatttcaaatatttcatgc--------ttgattcatgtatcttgttttgtttcagGTGGGTCCCTATAAAAGGCAATGATTGGTATTGGATTCGCCACCACATAAAAGTTGGTATGCATGTCATTGTTGAAATCCTG------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttcatatgctttttttgaaagatgtaagtttatgtgtctattggtttgcagATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAAGGCACATA
             tttttttgaaagat  TA-rich tract