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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctcagttgagaagatgttttcttaccatgatttaatactaaatgcctgcactctaacttctgtaatggcagCTAATGGCACTTTTACTGTTACGAGATGCGCTAAATCTCACAACGAACCCAGACGACGAGGACGATCCAACTGCCTTCTTCTCT

Basic information

species Arabidopsis thaliana
transcript AT3G47550.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501426|gb|HO206966.1|HO206966
EST:     CTGAGAATAACTCAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATC                         CTAATGGCACTTTTACTGTTACGAGATGCGCTAAATCTCA
genomic: CTGAGAATAACTCAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATCgtaagctctc ... gtaatggcagCTAATGGCACTTTTACTGTTACGAGATGCGCTAAATCTCA
EST: gi|116399259|gb|EG441851.1|EG441851
EST:     TGAGAATAAACTCA-GCGGAGCTGCCCTTTGTCGCTCTGCTGCTCTCATC                         CTAATGGCACTTTTACTGGTACGAGAATGCGCTAA-TCTCACCACGAACCC
genomic: TGAGAATAA-CTCAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATCgtaagctctc ... gtaatggcagCTAATGGCACTTTTACTGTTACGAGA-TGCGCTAAATCTCACAACGAACCC
EST: gi|124841356|gb|EH925793.1|EH925793
EST:     CTGAGAATAACTCAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATC                         CTAATGGCACTTTTA
genomic: CTGAGAATAACTCAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATCgtaagctctc ... gtaatggcagCTAATGGCACTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttaccatgatttaatactaaatgcctgcactctaacttctgtaatggcagCTAATGGCACTTTTACTGTTACGAGATGCGCTAAATCTCACAACGAACCCAGACGACGAGGACGATCCAACTGCCTTCTTCTCT
                                        cttctgt  CT-rich tract
          atgatttaatactaaa  TA-rich tract