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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccctagtaccaacatgttcttaatataatcttgttcgttttagttctcttaagaaatttataagaatattgtaccgcagGTATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCTTTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGT

Basic information

species Arabidopsis thaliana
transcript AT3G46980.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46980.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G38930.1 (Glycine max), 3'ss of exon 5
gtaaggccc-tagtaccaacatgttcttaatataatcttgttcgttttagttctc----ttaagaaatttataagaata---ttgtaccgcagGTATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCTTTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGT
|||||     |  ||   |  |||  ||   | | | |       |||||   ||     | ||||   | ||  |||    ||  |    |||| || | |||| | ||||  || || || ||||||||||| |||||||||  | |||||||| |||| || ||| ||||||| || ||||||||| || 
gtaagatttatcatatttagttgtgattgtcaaattataaaaatatttagaaatcaacacttagaaccatgtataaatggttttccattatagGTGTACCGTGTGGATCTCAGGCATGCGGCATGGTTTAGTGCAGTTCCATGGGCTGTGATGGCTGTCACGGGTTACTTTGCTGGCTTGTGGTCGGATATGA

upper sequence: AT3G46980.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 4
gtaaggccctagtacca-----------acatgttcttaatataatcttgttcgtt--------ttagttctctta-agaaatttataagaa----tattgtaccgcagGTATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCTTTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGT
||||||||| | |||             |||  || ||  | || | ||  |   |        ||| |  | ||| |  || | ||||       | || | | |||| || ||| |||  |||||| |||||| || ||||| ||||| ||||||||||||||||||||  |   ||||||| ||| ||||  |||||| ||| | |
gtaaggcccaattactttgccatgaaacacacatttttgttgtactattactgtctacatgagcttaatctttttataagaaatcataaatgctgcttttctgctgcagATACATCGTGTTGACCTCACACAAGCAGCCTGGTTCAGTGCTGTTCCATGGAGTATGATGGCAATTGTAGGATACTTTGGTGGTGCTTGGTCAGATATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatcttgttcgttttagttctcttaagaaatttataagaatattgtaccgcagGTATATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCTTTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGT
                   ttctcttaagaaattt  TA-rich tract