1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggttttgaaattctctggcttgttgctgctattgagaatggaatattcctgtcttttgttctatccatttatattttggttttgggtttaacagATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAA
species | Arabidopsis thaliana |
transcript | AT3G46440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACG ATGTCACGGAGCCACTTTTGEST: gi|116428943|gb|EG471535.1|EG471535
genomic: CAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGgtatggtttt ... ggtttaacagATGTCACGGAGCCACTTTTG
EST: CAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACG ATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATEST: gi|19876171|gb|AU237002.1|AU237002
genomic: CAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGgtatggtttt ... ggtttaacagATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCAT
EST: CAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACG ATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCAT
genomic: CAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACGgtatggtttt ... ggtttaacagATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCAT
ggaatattcctgtcttttgttctatccatttatattttggttttgggtttaacagATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAA
atttatattttggttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggttttgaaattctctggcttgttgctgctattgagaatggaatattcctgtcttttgttctatccatttatattttggttttgggtttaacagATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA