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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacagGTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAG

Basic information

species Arabidopsis thaliana
transcript AT3G45240.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 4
gtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacagGTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAG
      ||||    ||  |||| || |||||     ||| ||| |  |  | ||||  ||   | ||  |  ||   ||  ||| || ||||| ||| ||||||||| |||| ||||||||||||||||| ||||||
------gtgagtgtaatattca-tggtacata----tcctgtctcaat-aaaaacaattttcctgagcctcttt-ccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacagGTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAG
               aacatcttaaataa  TA-rich tract