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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccagctattaccagcattgctaagtaccatgccacacaattctttgagtatattcgttcacttgatattgatacactttctttgtcttatctttttgcagTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTTTGAACACATTCCTATGCAAAA

Basic information

species Arabidopsis thaliana
transcript AT3G43740.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124910345|gb|EH984425.1|EH984425
EST:     TCCTAGAGAACTCACAGTTATTTCAAGCCTTAAAGTTGT                         TGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTT
genomic: TCCTAGAGAACTCACAGTTATTTCAAGCCTTAAAGTTGTgtaagtccag ... ctttttgcagTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTT
EST: gi|125087247|gb|EL146441.1|EL146441
EST:     ACCGGTCCTATTCCTAGAGAACTCACAGTTATTTCAAGCCTTAAAGTTGT                         TGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTT
genomic: ACCGGTCCTATTCCTAGAGAACTCACAGTTATTTCAAGCCTTAAAGTTGTgtaagtccag ... ctttttgcagTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTT
EST: gi|124802898|gb|EH891451.1|EH891451
EST:     AACTCACAGTTATTTCAAGCCTTAAAGTTGT                         TGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTT
genomic: AACTCACAGTTATTTCAAGCCTTAAAGTTGTgtaagtccag ... ctttttgcagTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtatattcgttcacttgatattgatacactttctttgtcttatctttttgcagTGATGTCTCAGGGAATGATTTGTGTGGAACAATTCCAGTAGAAGGACCTTTTGAACACATTCCTATGCAAAA
                    tattgat  putative branch site (score: 3)
                            cactttctttgtctta  CT-rich tract
                                         ttatcttttt  TA-rich tract