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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcctttttttccttttgttaggtatcagaaacaagcttggatatttgtttaaaaacttgtcacctcttttctaagtcgattaacgtctcatgtagtttttgatgtccattgcagTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCCTCACCCGAAGCATACGAGTCCGCCATCAAAGCACAA

Basic information

species Arabidopsis thaliana
transcript AT3G29200.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29200.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv14s0108g01330.t01 (Vitis vinifera), 3'ss of exon 4
gtttgttcctttttttccttttgttaggtatcagaaacaagcttggatatttgtttaaaaacttgtcacctcttttctaagtcgattaacgtctcatgtagtttttgatgtccattgcagTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCCTCACCCGAAGCATACGAGTCCGCCATCAAAGCACAA
          | | ||| |       ||  ||  | ||||     |||    ||  || || |    |  |   |    ||| |  |||| |  ||   | | || ||  ||| ||||||  ||| |||||||||||||| || || || || || ||||| || ||||| |||||||| || || ||||||||  | |||||||||||||||
--------tatgtgttcttgcaacccgggctctcacacaaatccagat----gtcgaataattctctaaatgcat----agttg--taacttggca-acactgttggacatcc-ttgcagGCTCTGTCAAAGAGAATCCACTATGGCAAGTTCGTGGCAGAGGCAAAATTCCAAGCCTCCCCAGATGCATACGAAGCTGCCATCAAAGCACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacctcttttctaagtcgattaacgtctcatgtagtttttgatgtccattgcagTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCCTCACCCGAAGCATACGAGTCCGCCATCAAAGCACAA
       ttttctaa  TA-rich tract