Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatccgttttccgctttcgcttttcgtgttctctcacgggatcaatgaaacgggttttaatgtgtttgtaacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGC

Basic information

species Arabidopsis thaliana
transcript AT3G26650.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G26650.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA19G28240.1 (Glycine max), 3'ss of exon 4
gtatgcaatccgttttccgctttcgcttttcgtg-ttctctcacgggatcaatgaaacgggttt--taatgtgtttgtaa----------------cattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGC
      ||   |  ||  || | |  | || | |  |   | | | ||  ||   | |   ||   || | ||  ||  |                |||  |||||||||| |||||||| ||||| || |||||||| |||||||||||||| ||| | || || ||||| |||||||| || ||| | ||||| ||||| ||
----ctaaaatgacttatgcatgcaatatttgagactaatttatgtgaagaaaagatcatattctctactatgcatgccaatggaaaatgacaatccatgacagGTATCATCAAGGGTACCATGACCACCACTCACTCCTACACCGGTGACCAAAGGCTTCTTGATGCGAGCCACCGTGACCTGAGGCGTGCAAGGGCAGCAGC

upper sequence: AT3G26650.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv01s0150g00500.t01 (Vitis vinifera), 3'ss of exon 4
gtatgcaatccgttt-tccgctttcgcttttcgtgttctctcacgggatcaatgaa-------------acgggttttaatgtgtttgtaacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGC
|||    |||   |  | |  || | |  ||    | || | |    ||  |  ||             | |  | | |||| || |   | ||   ||| |||||||||||||||||||| || |||||||||||||| || ||||||||  |  | || || || ||||| |  || |||   |   | || |||| 
gtaattcatcaaatcattcatttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaatg-gtgttccatatgatagGAATCATAAAGGGTACAATGACCACCACTCACTCTTACACTGGCGACCAGAGACTTTTTGATGCAAGCCACCGGGTCCTCAGGCCTGTGCGTGCTGCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116461866|gb|EG504458.1|EG504458
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125063083|gb|EL131189.1|EL131189
EST:     TTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125015562|gb|EL087831.1|EL087831
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAA
EST: gi|124917107|gb|EH990981.1|EH990981
EST:     TTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124874203|gb|EH955848.1|EH955848
EST:     TTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124842885|gb|EH927322.1|EH927322
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAA
EST: gi|125022254|gb|EL094523.1|EL094523
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGG
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGG
EST: gi|125028501|gb|EL100770.1|EL100770
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125102756|gb|EL157406.1|EL157406
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTA
EST: gi|124938472|gb|EL015096.1|EL015096
EST:     ACTACCAACTGTCTTGCTCCCTTTGTCAAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGG
genomic: ACTACCAACTGTCTTGCTCCCTTTGTCAAA-GTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGG
EST: gi|124816725|gb|EH901591.1|EH901591
EST:     CCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124933471|gb|EL010625.1|EL010625
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACT
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACT
EST: gi|125237588|gb|EL251673.1|EL251673
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAA
EST: gi|125200626|gb|EL215580.1|EL215580
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCAC
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCAC
EST: gi|125227359|gb|EL241444.1|EL241444
EST:     CTTGCTCCCTTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CTTGCTCCC-TTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125042230|gb|EL114499.1|EL114499
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCAATAAAGGGTACAATGACGACTACTCACTCTT
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCA-TAAAGGGTACAATGACGACTACTCACTCTT
EST: gi|125108285|gb|EL161278.1|EL161278
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125224944|gb|EL239029.1|EL239029
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACC
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACC
EST: gi|124911174|gb|EH985254.1|EH985254
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAA
EST: gi|116475945|gb|EG518537.1|EG518537
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124807327|gb|EH893731.1|EH893731
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTA
EST: gi|124790518|gb|EH880197.1|EH880197
EST:     CTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTG-CCAGA
genomic: CTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124763007|gb|EH853137.1|EH853137
EST:     TGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124759380|gb|EH849510.1|EH849510
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCG
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCG
EST: gi|125064086|gb|EL131835.1|EL131835
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTA
EST: gi|125033106|gb|EL105375.1|EL105375
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAA
EST: gi|124915000|gb|EH988874.1|EH988874
EST:     CTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124939246|gb|EL015803.1|EL015803
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACT
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACT
EST: gi|125255851|gb|EL269936.1|EL269936
EST:     TGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125032131|gb|EL104400.1|EL104400
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGA
EST: gi|116448001|gb|EG490593.1|EG490593
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125283289|gb|EL297374.1|EL297374
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTT
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTT
EST: gi|125204375|gb|EL219329.1|EL219329
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAAGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124976899|gb|EL050282.1|EL050282
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTAC
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTAC
EST: gi|116448000|gb|EG490592.1|EG490592
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124963094|gb|EL037453.1|EL037453
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGAACGACTACTCACTCTTACACCGGTGACCAG
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGA-CGACTACTCACTCTTACACCGGTGACCAG
EST: gi|124912698|gb|EH986690.1|EH986690
EST:     CTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125313624|gb|EL327709.1|EL327709
EST:     TGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125304842|gb|EL318927.1|EL318927
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGG
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGG
EST: gi|124942236|gb|EL018520.1|EL018520
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGAC
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGAC
EST: gi|124812210|gb|EH897076.1|EH897076
EST:     ACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: ACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124884298|gb|EH963200.1|EH963200
EST:     TTGACCAGAAATTCG                         GTATCATAAAGGGTACGAATGACGACTACTCACTCTTACACCGGTGACCAG
genomic: TTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTAC-AATGACGACTACTCACTCTTACACCGGTGACCAG
EST: gi|124784056|gb|EH873828.1|EH873828
EST:     ACTACCAACTGTCTTGCTCCCTTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCG
genomic: ACTACCAACTGTCTTGCTCCC-TTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCG
EST: gi|124873927|gb|EH955572.1|EH955572
EST:     TTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACCCTTACACCGGTGACCAGA
genomic: TTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124727550|gb|EH818952.1|EH818952
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTA
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTA
EST: gi|124818725|gb|EH903591.1|EH903591
EST:     TTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124924194|gb|EL002314.1|EL002314
EST:     CCAACTGTCTTGCTCCCTTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CCAACTGTCTTGCTCCC-TTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|125081861|gb|EL142925.1|EL142925
EST:     GTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: GTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124706319|gb|EH797721.1|EH797721
EST:     ACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: ACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124721962|gb|EH813364.1|EH813364
EST:     CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCT
genomic: CACTACCAACTGTCTTGCTCCCTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCT
EST: gi|164094387|gb|ES079335.1|ES079335
EST:     CTTTTTCAAAGTTCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: CTTTGTCAAAGTTCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
EST: gi|124856336|gb|EH940773.1|EH940773
EST:     TCTTGACCAGAAATTCG                         GTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA
genomic: TCTTGACCAGAAATTCGgtatgcaatc ... aacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgttctctcacgggatcaatgaaacgggttttaatgtgtttgtaacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGC
                                         ttgtaac  putative branch site (score: 2)
                              ttttaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcaatccgttttccgctttcgcttttcgtgttctctcacgggatcaatgaaacgggttttaatgtgtttgtaacattgcagGTATCATAAAGGGTACAATGACGACTACTCACTCTTACACCGGTGACCAGAGGTTGCTAGACGCGAGTCACCGTGATCTAAGGAGAGCAAGAGCAGCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
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