1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
species | Arabidopsis thaliana |
transcript | AT3G25520.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTEST: gi|125315736|gb|EL329821.1|EL329821
genomic: TGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: CGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTEST: gi|164065414|gb|ES173436.1|ES173436
genomic: CGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCEST: gi|125298797|gb|EL312882.1|EL312882
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTEST: gi|164142488|gb|ES202890.1|ES202890
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: CTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTEST: gi|164089022|gb|ES118289.1|ES118289
genomic: CTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTACGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCEST: gi|124870065|gb|EH954502.1|EH954502
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTC
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGEST: gi|164051634|gb|ES182175.1|ES182175
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG
EST: GGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCEST: gi|124743283|gb|EH834445.1|EH834445
genomic: GGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGG-TGGTCTTGATATCCCTCACAGTGACAAGAGATTTGC
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGEST: gi|125259494|gb|EL273579.1|EL273579
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGG
EST: CAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGEST: gi|125043149|gb|EL115418.1|EL115418
genomic: CAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAG
EST: GGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTEST: gi|164237108|gb|ES062303.1|ES062303
genomic: GGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTEST: gi|164228852|gb|EL970520.1|EL970520
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAEST: gi|124730740|gb|EH822142.1|EH822142
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGA
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTEST: gi|124885529|gb|EH964431.1|EH964431
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACEST: gi|125105952|gb|EL159565.1|EL159565
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCAC
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATEST: gi|164064740|gb|ES003340.1|ES003340
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATAT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGEST: gi|164075882|gb|ES187771.1|ES187771
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGG
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGEST: gi|125263094|gb|EL277179.1|EL277179
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTG
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCC-CACAGTGEST: gi|124880602|gb|EH959504.1|EH959504
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTG
EST: CCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTEST: gi|124839604|gb|EH924043.1|EH924043
genomic: CCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCT
EST: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAG GGTGCTTTGGATGGT
genomic: TTGGACTTATCAGGACCACAACAGGAAACCGTGTGTTCGGTGCTCTTAAGgtattaactt ... gaatctgtagGGTGCTTTGGATGGT
atgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
ctttaat putative branch site (score: 4)
aattctttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaacttgtttctctttttttgttgtgagtgctcttatttgtcattcttcttgagcaaatgcttatactggcaattctttaatatccttttggttcgctgtttgaatctgtagGGTGCTTTGGATGGTGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGGTTCCACAAGGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG