Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactcaagtcacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG

Basic information

species Arabidopsis thaliana
transcript AT3G25520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 5
---gtatgttgtgtgattggtttcatcttgataataagaagcattgttattgtctcttgttagaaactcaagtcacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG
     || | |    ||   |    |  |  |||||       |||   | || |  | ||    ||     ||      |  ||||||||||||| || ||||| || ||||||||| |||||   ||||| ||||||||||||||  | |||||||| ||||||||||| |||||||| |||||||
gtaaaatttggccaaatatataatcttattttaatatctgatgttgcattggtttggtatttctgac--ggttctttttgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATCAGGACTACAACAGGGAACCGTG

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 5
gtatgttgtgtgatt-ggtttcatcttgataataagaagcattgttattgtctcttgttagaaactcaagtcacac-----aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG
       ||   ||| || |  || | |||  ||        || | |    | | ||| |  | | |  |            |  ||||||||||||| || ||||| || ||||||||| |||||   ||||| ||||||||||||||  | |||||||| ||||| ||||| ||||| || |||||||
-------gtaaaatttggctaaatttcgatcttattttttgctgatgtcacat-tggttgggcatttatattgtttcttttcgttcatcagGCCACTGGTGAGGACTTCTCTGTTGAGCCAGCTGATGAGAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTTATTAGGACTACAACTGGGAACCGTG

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G03170.1 (Glycine max), 3'ss of exon 5
gtatgttgtgtgattg----gtttcatcttgataataagaagcattgttattgtctc----ttgttagaaactcaagt-cacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG
|||| || ||   |||    | |   | |   |      ||    ||   || ||||    ||||||   | |    |  |  |  |  ||||||| |||||||| |||| ||| || || ||  ||||    ||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||
gtat-ttatgaatttgctatgctgtgtgtgtgtgtgtgcaactgctgcctttctctcagttttgttaattaattggttgtatccttttcatcagGCTACTGGAGAGGACTATTCAGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACTGGCAACCGTG

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA07G06580.1 (Glycine max), 3'ss of exon 5
gtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG
|||| || || | ||| | |  | ||  |     |   ||   | || || | |     |  | ||   | |    ||  |   |   |||||| |||||||| || | |||||| || ||  ||||    ||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||
gtat-ttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG

upper sequence: AT3G25520.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA07G06590.1 (Glycine max), 3'ss of exon 5
gtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG
|||| || || |  || | |    ||  |     |   ||   | || ||   |     |  | ||   | |    ||  |   |   |||||| |||||||| || | |||||| || ||  ||||    ||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||
gtat-ttatgagtctgctatgccttttgtgcccgagcgagtgcctttctttcagctgtgtaagctaatgagttgtatcttattttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038124|gb|DR333879.1|DR333879
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGA
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGA
EST: gi|86038155|gb|DR333910.1|DR333910
EST:     GTGTTTTGAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTT
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGG-AGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTT
EST: gi|86038142|gb|DR333897.1|DR333897
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038128|gb|DR333883.1|DR333883
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGAC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGAC
EST: gi|86038118|gb|DR333873.1|DR333873
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|164048039|gb|ES203625.1|ES203625
EST:     TGAGGGAAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TGAGGG-AAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124942201|gb|EL018488.1|EL018488
EST:     TTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038119|gb|DR333874.1|DR333874
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124957440|gb|EL032276.1|EL032276
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAG
EST: gi|86038121|gb|DR333876.1|DR333876
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGA-TTTTCCGTTGAG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAG
EST: gi|125270568|gb|EL284653.1|EL284653
EST:     TATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124907528|gb|EH981608.1|EH981608
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACC
EST: gi|164165069|gb|ES033006.1|ES033006
EST:     TGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038143|gb|DR333898.1|DR333898
EST:     GTGTTTTAAAGATGTAGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAG
EST: gi|124728441|gb|EH819843.1|EH819843
EST:     ATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: ATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038125|gb|DR333880.1|DR333880
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACT
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACT
EST: gi|86038109|gb|DR333864.1|DR333864
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125015475|gb|EL087744.1|EL087744
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAAAAGACTTTTCCGT
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGT
EST: gi|86038134|gb|DR333889.1|DR333889
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038133|gb|DR333888.1|DR333888
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038149|gb|DR333904.1|DR333904
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125061217|gb|EL129856.1|EL129856
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038116|gb|DR333871.1|DR333871
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038145|gb|DR333900.1|DR333900
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAG
EST: gi|86038140|gb|DR333895.1|DR333895
EST:     GTGTTTTGAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038150|gb|DR333905.1|DR333905
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAG
EST: gi|86038156|gb|DR333911.1|DR333911
EST:     TGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAA-CGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125219479|gb|EL233564.1|EL233564
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCA
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCA
EST: gi|86038144|gb|DR333899.1|DR333899
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCA
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCA
EST: gi|86038130|gb|DR333885.1|DR333885
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAATGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|164072194|gb|EL982875.1|EL982875
EST:     CGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: CGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|164221299|gb|ES108431.1|ES108431
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTT
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTT
EST: gi|86038129|gb|DR333884.1|DR333884
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGC-AACTGATTCAAGGAGAC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGAC
EST: gi|125307312|gb|EL321397.1|EL321397
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGNG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAAC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAAC
EST: gi|86038123|gb|DR333878.1|DR333878
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAATGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGAC-TTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125076848|gb|EL139852.1|EL139852
EST:     TGTTTTAAAGATGTTGGAAAGTGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGA
genomic: TGTTTTAAAGATGTTGGAAA-TGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGA
EST: gi|86038141|gb|DR333896.1|DR333896
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038132|gb|DR333887.1|DR333887
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124920068|gb|EH993806.1|EH993806
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACT
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACT
EST: gi|124815875|gb|EH900741.1|EH900741
EST:     GTGTTTTAAAGATGTTGGAGATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGA
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGA
EST: gi|124910228|gb|EH984308.1|EH984308
EST:     TTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038114|gb|DR333869.1|DR333869
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|124949905|gb|EL025417.1|EL025417
EST:     TGTTGG-AATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATT
genomic: TGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATT
EST: gi|86038131|gb|DR333886.1|DR333886
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|164125103|gb|EL988845.1|EL988845
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|125240956|gb|EL255041.1|EL255041
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTG
EST: gi|86038148|gb|DR333903.1|DR333903
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038111|gb|DR333866.1|DR333866
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038138|gb|DR333893.1|DR333893
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038110|gb|DR333865.1|DR333865
EST:     GTGTTTTGAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038154|gb|DR333909.1|DR333909
EST:     GTGTTTTGAAGATGTTGGAAATGGATGACGAGTATGAGGGGAACGTTGAG                         GCCACTGGWGAAGACTTTTCCGTTGAGCCAACTG
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTG
EST: gi|164006650|gb|EL971289.1|EL971289
EST:     TTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTCTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: TTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038117|gb|DR333872.1|DR333872
EST:     GTGTTTTAAAGATGTAGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038135|gb|DR333890.1|DR333890
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTT
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTT-CCGTTGAGCCAACTGATTCAAGGAGACCTTT
EST: gi|125255909|gb|EL269994.1|EL269994
EST:     ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
EST: gi|86038147|gb|DR333902.1|DR333902
EST:     GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAG                         GCCACTGGAGAGGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC
genomic: GTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtg ... aatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagaagcattgttattgtctcttgttagaaactcaagtcacacaatgaatcagGCCACTGGAGAAGACTTTTCCGTTGAGCCAACTGATTCAAGGAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACCACAACAGGAAACCGTG
         attgttatt  TA-rich tract